##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779695_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14387 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.00938347118927 34.0 34.0 34.0 31.0 34.0 2 33.2999235420866 34.0 34.0 34.0 33.0 34.0 3 33.34385208869118 34.0 34.0 34.0 33.0 34.0 4 33.37832765691249 34.0 34.0 34.0 34.0 34.0 5 33.35858761381803 34.0 34.0 34.0 33.0 34.0 6 36.509279210398276 38.0 37.0 38.0 34.0 38.0 7 36.5858761381803 38.0 37.0 38.0 34.0 38.0 8 36.14575658580663 38.0 37.0 38.0 34.0 38.0 9 35.97998192812956 38.0 36.0 38.0 32.0 38.0 10-11 36.090220337804965 38.0 36.5 38.0 33.0 38.0 12-13 36.20661013414888 38.0 37.0 38.0 34.0 38.0 14-15 36.17856398137207 38.0 37.0 38.0 34.0 38.0 16-17 36.09793563633836 38.0 36.5 38.0 33.0 38.0 18-19 36.182734413011744 38.0 37.0 38.0 34.0 38.0 20-21 36.204907207896014 38.0 37.0 38.0 34.0 38.0 22-23 35.98175436157642 38.0 36.0 38.0 32.0 38.0 24-25 36.02418850351012 38.0 36.0 38.0 32.5 38.0 26-27 35.845103218183084 38.0 36.0 38.0 31.5 38.0 28-29 35.75710711058595 38.0 36.0 38.0 31.5 38.0 30-31 35.703586571210124 38.0 36.0 38.0 31.0 38.0 32-33 35.695315215124765 38.0 36.0 38.0 31.0 38.0 34-35 35.74056439841523 38.0 36.0 38.0 31.0 38.0 36-37 35.762215889344546 38.0 36.0 38.0 31.0 38.0 38-39 35.91440189059567 38.0 36.0 38.0 32.0 38.0 40-41 35.926218113574755 38.0 36.0 38.0 32.0 38.0 42-43 35.778376311948286 38.0 36.0 38.0 31.0 38.0 44-45 35.80284284423438 38.0 36.0 38.0 31.5 38.0 46-47 35.79405018419406 38.0 36.0 38.0 31.0 38.0 48-49 35.80037533884757 38.0 36.0 38.0 31.5 38.0 50-51 35.812990894557586 38.0 36.0 38.0 32.0 38.0 52-53 35.780913324529095 38.0 36.0 38.0 31.5 38.0 54-55 35.79307708347814 38.0 36.0 38.0 31.5 38.0 56-57 35.77969694863418 38.0 36.0 38.0 31.5 38.0 58-59 35.715541808577186 38.0 36.0 38.0 31.0 38.0 60-61 35.73726280670049 38.0 36.0 38.0 31.0 38.0 62-63 35.600264127337184 38.0 36.0 38.0 31.0 38.0 64-65 35.52961006464169 38.0 36.0 38.0 31.0 38.0 66-67 35.54691735594634 38.0 36.0 38.0 31.0 38.0 68-69 35.47504691735595 38.0 36.0 38.0 31.0 38.0 70-71 35.39292416765136 38.0 36.0 38.0 31.0 38.0 72-73 35.48741919788698 38.0 36.0 38.0 31.0 38.0 74-75 35.52839368874679 38.0 36.0 38.0 31.0 38.0 76 34.32960311392229 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 0.0 22 1.0 23 5.0 24 10.0 25 11.0 26 29.0 27 46.0 28 86.0 29 134.0 30 255.0 31 409.0 32 624.0 33 914.0 34 1502.0 35 2278.0 36 3512.0 37 4570.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.19781747410857 21.762702439702508 11.781469382081045 24.258010704107875 2 22.42997150205046 22.061583373879195 32.84214916243831 22.66629596163203 3 21.018975463960523 24.605546674080767 30.63182039341072 23.743657468547994 4 16.4384513797178 18.203934107180093 37.353166052686454 28.004448460415652 5 14.950997428233823 35.74059915201223 35.108083686661566 14.200319733092376 6 32.50156391186488 36.36616389796344 17.745186626815876 13.387085563355807 7 29.067908528532705 30.305136581636198 22.506429415444497 18.120525474386596 8 26.169458538958786 35.62243692222145 19.329950649892265 18.878153888927503 9 26.315423646347398 18.176131229582264 20.511572947800097 34.996872176270244 10-11 26.676861055119204 25.721137137693752 26.795023284909984 20.806978522277056 12-13 26.808924723708905 23.052060888301938 26.14165566136095 23.997358726628207 14-15 25.234586779731703 23.903524014735524 23.187599916591367 27.674289288941406 16-17 24.69243066657399 27.75074720233544 24.605546674080767 22.9512754570098 18-19 24.303190380204352 26.7845972058108 26.232015013553905 22.680197400430945 20-21 24.205880308611942 26.843678320706193 25.4987141169111 23.451727253770766 22-23 24.105094877319804 27.417112671161465 25.662056022798357 22.815736428720374 24-25 23.816640022242304 27.95231806491972 26.44053659553764 21.79050531730034 26-27 23.879196496837423 27.56307777855008 26.124278862862305 22.43344686175019 28-29 24.011260165427124 27.50399666365469 27.01397094599291 21.47077222492528 30-31 23.319663585181065 27.514422742753876 26.934037672899148 22.231875999165915 32-33 23.646347396955587 28.616111767567944 26.388406200041704 21.34913463543477 34-35 24.605546674080767 26.989643428094805 27.52484882185306 20.879961075971362 36-37 24.400500451796763 27.01049558629318 26.62125529992354 21.967748661986516 38-39 23.611593799958296 26.72551609091541 27.72989504413707 21.93299506498923 40-41 23.747132828247725 25.960936956975043 28.10870925140752 22.18322096336971 42-43 24.21630638771113 26.857579759505107 26.81587544310836 22.1102384096754 44-45 23.204976715090012 27.139083895183152 27.53179954125252 22.124139848474318 46-47 24.17807743101411 25.696809619795648 27.14603461458261 22.97907833460763 48-49 23.941752971432543 26.061722388267185 27.55612705915062 22.44039758114965 50-51 23.420449016473206 25.481337318412457 27.99402238131647 23.104191283797874 52-53 23.17717383749218 25.505664836310558 28.94627093904219 22.37089038715507 54-55 23.347466462778897 25.905331201779386 28.557030652672548 22.190171682769165 56-57 23.56988948356155 25.505664836310558 28.053103496211858 22.871342183916035 58-59 23.11114200319733 26.65948425662056 28.310280113991798 21.91909362619031 60-61 23.34399110307917 28.007923820115384 27.173837492180443 21.474247584625008 62-63 22.940849377910613 28.303329394592343 26.826301522207547 21.929519705289497 64-65 22.76360603322444 29.133940362827556 26.287620768749566 21.814832835198445 66-67 22.555084451240702 28.89761590324599 26.628206019323 21.91909362619031 68-69 22.24577743796483 29.022728852436224 26.68728713421839 22.04420657538055 70-71 22.749704594425523 28.1782164454021 26.7359421700146 22.33613679015778 72-73 22.676722040731214 27.73684576353653 26.409258358240077 23.17717383749218 74-75 22.683672760130673 27.7576979217349 26.645582817821644 22.913046500312785 76 22.72190171682769 27.6013067352471 26.301522207548484 23.37526934037673 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 1.0 15 1.0 16 2.0 17 3.0 18 4.0 19 4.5 20 6.5 21 9.0 22 10.0 23 23.0 24 41.0 25 47.0 26 57.0 27 82.5 28 116.0 29 134.0 30 150.0 31 188.0 32 266.5 33 323.0 34 367.5 35 450.0 36 507.0 37 526.0 38 593.0 39 735.5 40 876.5 41 909.0 42 876.0 43 882.5 44 910.0 45 908.5 46 886.0 47 836.0 48 754.0 49 676.5 50 631.0 51 554.0 52 424.5 53 346.5 54 321.0 55 323.0 56 271.0 57 215.0 58 213.0 59 179.5 60 147.0 61 144.0 62 140.0 63 129.5 64 126.0 65 116.0 66 111.5 67 124.0 68 125.5 69 120.0 70 110.5 71 108.0 72 100.0 73 85.5 74 80.5 75 82.0 76 78.0 77 67.5 78 55.5 79 50.0 80 39.5 81 26.5 82 18.0 83 12.0 84 11.0 85 9.0 86 6.0 87 4.0 88 2.5 89 0.5 90 1.5 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 14387.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 72.99645513310628 #Duplication Level Percentage of deduplicated Percentage of total 1 78.08036564463912 56.99589907555433 2 14.854313464102075 21.686244526308474 3 3.9706722529042087 8.695349968721763 4 1.6377832793753573 4.782094946826996 5 0.5522757569986669 2.0157086258427745 6 0.3523138449819082 1.5430597066796412 7 0.27613787849933347 1.4109960380899422 8 0.047609979051609214 0.27802877597831377 9 0.057131974861931056 0.37533884757072355 >10 0.16187392877547135 1.466601793285605 >50 0.0 0.0 >100 0.009521995810321844 0.7506776951414471 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT 108 0.7506776951414471 TruSeq Adapter, Index 5 (95% over 23bp) ATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTCTT 28 0.19462014318481963 TruSeq Adapter, Index 5 (96% over 26bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.006950719399457844 0.0 20 0.0 0.0 0.0 0.013901438798915687 0.0 21 0.0 0.0 0.0 0.013901438798915687 0.0 22 0.0 0.0 0.0 0.013901438798915687 0.0 23 0.0 0.0 0.0 0.013901438798915687 0.0 24 0.0 0.0 0.0 0.013901438798915687 0.0 25 0.0 0.0 0.0 0.013901438798915687 0.0 26 0.0 0.0 0.0 0.013901438798915687 0.0 27 0.0 0.0 0.0 0.013901438798915687 0.0 28 0.0 0.0 0.0 0.013901438798915687 0.0 29 0.0 0.0 0.0 0.04865503579620491 0.0 30 0.0 0.0 0.0 0.04865503579620491 0.0 31 0.0 0.0 0.0 0.05560575519566275 0.0 32 0.0 0.0 0.0 0.06255647459512059 0.0 33 0.0 0.0 0.0 0.06950719399457844 0.0 34 0.0 0.0 0.0 0.08340863279349413 0.0 35 0.0 0.0 0.0 0.09035935219295196 0.0 36 0.0 0.0 0.0 0.13901438798915688 0.0 37 0.0 0.0 0.0 0.21547230138319315 0.0 38 0.0 0.0 0.0 0.2849794953777716 0.0 39 0.0 0.0 0.0 0.3336345311739765 0.0 40 0.0 0.0 0.0 0.41704316396747065 0.0 41 0.0 0.0 0.0 0.5004517967609647 0.0 42 0.0 0.0 0.0 0.5977618683533745 0.0 43 0.0 0.0 0.0 0.7854312921387364 0.0 44 0.0 0.0 0.0 0.9591992771251825 0.0 45 0.0 0.0 0.0 1.1746715785083757 0.0 46 0.0 0.0 0.0 1.3901438798915688 0.0 47 0.0 0.0 0.0 1.598665461875304 0.0 48 0.0 0.0 0.0 1.7654827274622924 0.0 49 0.0 0.0 0.0 1.9879057482449434 0.0 50 0.0 0.0 0.0 2.2033780496281365 0.0 51 0.0 0.0 0.0 2.48140682560645 0.0 52 0.0 0.0 0.0 2.724682004587475 0.0 53 0.0 0.0 0.0 2.995760061166331 0.0 54 0.0 0.0 0.0 3.197330923750608 0.0 55 0.0 0.0 0.0 3.3641481893375964 0.0 56 0.0 0.0 0.0 3.530965454924585 0.0 57 0.0 0.0 0.0 3.7533884757072355 0.0 58 0.0 0.0 0.0 4.073121568082296 0.0 59 0.0 0.0 0.0 4.2955445888649475 0.0 60 0.0 0.0 0.0 4.4832140126503095 0.0 61 0.0 0.0 0.0 4.782094946826996 0.0 62 0.0 0.0 0.0 5.046222284006395 0.0 63 0.0 0.0 0.0 5.372906095780913 0.0 64 0.0 0.0 0.0 5.70654062695489 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCTCG 15 0.0021802788 70.0 36 TTAGGCT 15 0.0021802788 70.0 3 AAAAATT 15 0.0021802788 70.0 67 CCGTCTT 25 2.3120898E-4 55.999996 47 CTGCTTG 25 2.3120898E-4 55.999996 54 CGTCTTC 25 2.3120898E-4 55.999996 48 ATCTCGT 20 0.0068136547 52.5 37 TGATCTC 20 0.0068136547 52.5 35 GTGATCT 20 0.0068136547 52.5 34 AAGTGAT 20 0.0068136547 52.5 32 TCTGCTT 35 1.9852818E-5 50.000004 53 TGCCGTC 30 5.686422E-4 46.666664 45 TATGCCG 30 5.686422E-4 46.666664 43 TTCTGCT 30 5.686422E-4 46.666664 52 ATGCCGT 30 5.686422E-4 46.666664 44 CGTATGC 30 5.686422E-4 46.666664 41 GCTTGAA 30 5.686422E-4 46.666664 56 TCGTATG 30 5.686422E-4 46.666664 40 GCCGTCT 30 5.686422E-4 46.666664 46 CGAGACA 30 5.686422E-4 46.666664 23 >>END_MODULE