FastQCFastQC Report
Wed 25 May 2016
SRR1779694_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779694_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77886
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTTG150.002217170.035
GACGCTC150.002217170.014
CTAGCAC150.002217170.03
ACGCTTC252.377169E-456.00000415
TATGCCG200.006927838552.568
CGGTGGT608.185452E-1152.546
TGTGTCG200.006927838552.535
GTGTCGA352.0694217E-550.036
TCTCGGT707.2759576E-1250.043
CCGACGC352.0694217E-550.021
TGGTCGC352.0694217E-550.049
GTGGTCG506.101982E-849.00000448
CTCGGTG800.048.12544
CGCCGTA305.8455067E-446.66666453
TCGGTGG757.385097E-1042.00000445
GGTGGTT602.5583722E-740.83333247
GCCGTAT350.001248572740.054
AGATCTC459.123092E-538.88888540
ATCTCGG654.792746E-737.69230742
GTGGTTG753.470086E-837.33333648
Produced by FastQC (version 0.11.5)