##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779694_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 77886 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.15416120997355 34.0 31.0 34.0 21.0 34.0 2 28.517243150245232 34.0 23.0 34.0 12.0 34.0 3 27.576547774953138 33.0 23.0 34.0 11.0 34.0 4 30.14091107516113 34.0 31.0 34.0 21.0 34.0 5 29.613640448861155 34.0 31.0 34.0 11.0 34.0 6 32.08322419947102 37.0 31.0 38.0 12.0 38.0 7 33.20080630665331 37.0 34.0 38.0 21.0 38.0 8 32.3929461007113 37.0 31.0 38.0 12.0 38.0 9 33.75476979174691 38.0 34.0 38.0 21.0 38.0 10-11 33.57649641784146 38.0 34.0 38.0 21.0 38.0 12-13 32.47593919317978 37.5 30.5 38.0 16.0 38.0 14-15 32.638009398351436 37.0 32.5 38.0 16.0 38.0 16-17 32.28186066815602 37.5 30.0 38.0 16.0 38.0 18-19 32.83532342141078 37.0 32.5 38.0 16.0 38.0 20-21 31.8480022083558 36.5 29.5 38.0 16.0 38.0 22-23 31.780936240145852 36.5 28.5 38.0 16.0 38.0 24-25 33.135370926739085 37.0 32.5 38.0 16.5 38.0 26-27 31.55330868191973 37.0 28.0 38.0 11.0 38.0 28-29 33.76852707803713 37.5 34.5 38.0 21.0 38.0 30-31 34.17679043730581 38.0 36.0 38.0 21.0 38.0 32-33 34.27271910227769 38.0 36.0 38.0 22.0 38.0 34-35 34.297749274580795 38.0 36.0 38.0 21.5 38.0 36-37 32.20162802044013 37.0 30.0 38.0 16.0 38.0 38-39 30.385878078216884 35.5 25.0 38.0 11.0 38.0 40-41 31.688698867575688 36.5 28.5 38.0 11.0 38.0 42-43 32.72940579821791 37.0 30.5 38.0 16.0 38.0 44-45 34.287734637803965 38.0 36.0 38.0 22.5 38.0 46-47 32.846352361143204 37.5 31.0 38.0 17.0 38.0 48-49 32.267140436021876 37.0 30.0 38.0 16.0 38.0 50-51 30.085952546028814 35.5 23.5 38.0 11.0 38.0 52-53 33.5023303289423 37.0 34.5 38.0 21.0 38.0 54-55 32.58334617261126 37.5 30.5 38.0 16.0 38.0 56-57 32.9737308373777 37.5 31.5 38.0 16.0 38.0 58-59 34.07405695503685 38.0 35.0 38.0 21.0 38.0 60-61 34.46332460262435 38.0 36.5 38.0 23.0 38.0 62-63 34.346345941504254 38.0 36.5 38.0 22.0 38.0 64-65 34.064466014431346 38.0 35.5 38.0 21.5 38.0 66-67 32.11692088436946 37.0 29.0 38.0 11.0 38.0 68-69 32.14493618878874 37.0 29.0 38.0 11.0 38.0 70-71 31.589322856482553 37.0 28.0 38.0 11.0 38.0 72-73 30.519785327273194 36.0 24.5 38.0 11.0 38.0 74-75 32.63624399763758 37.0 30.5 38.0 16.0 38.0 76 33.32348560716945 37.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 11.0 13 108.0 14 326.0 15 558.0 16 896.0 17 1331.0 18 1560.0 19 1490.0 20 1297.0 21 1044.0 22 814.0 23 693.0 24 734.0 25 695.0 26 795.0 27 1010.0 28 1199.0 29 1508.0 30 2054.0 31 2768.0 32 3884.0 33 5988.0 34 8763.0 35 13101.0 36 16068.0 37 9190.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 36.43787073414991 20.729014200241377 14.295252035025548 28.53786303058316 2 20.017718203528233 19.093290193359525 39.07377449092263 21.81521711218961 3 21.03202115913001 19.443802480548495 35.472357034640375 24.051819325681123 4 14.512235831856815 19.681329122050176 32.94943892355494 32.85699612253807 5 15.102842616131268 30.07600852528054 38.10184115245359 16.719307706134607 6 27.728988521685537 33.216495904270346 17.054412859820765 22.000102714223353 7 24.674524304753103 28.379939912179342 21.625195798988265 25.320339984079293 8 21.662429704953393 33.0316103022366 19.980484297563105 25.3254756952469 9 22.471304213851013 17.281668078987238 21.63418329353157 38.61284441363018 10-11 23.991474719461777 25.279896258634416 27.253935238682175 23.474693783221632 12-13 23.621703515394294 21.52633335901189 29.28061525819788 25.57134786739594 14-15 22.70369514418509 24.278432580951648 24.532008319852093 28.48586395501117 16-17 23.383534909996662 25.13288652646175 26.59014457026937 24.893433993272218 18-19 21.258634414400536 25.114269573479188 28.408828287497112 25.218267724623168 20-21 23.402793826875175 24.353542356777854 27.483758313432453 24.759905502914517 22-23 23.74367665562489 23.415633104794185 28.152684693012866 24.68800554656806 24-25 22.36538017101918 26.088770767532033 24.94671699663611 26.599132064812675 26-27 22.499550625272835 24.705980535654675 28.125722209382943 24.668746629689547 28-29 22.446267621908945 25.874354826284566 26.55483655599209 25.124540995814392 30-31 22.607400559792517 26.065018103381867 26.367383098374546 24.96019823845107 32-33 22.41352746321547 25.588680892586602 26.74100608581773 25.256785558380194 34-35 22.33520786790951 25.65416120997355 26.700562360372853 25.310068561744085 36-37 22.772385281051793 23.956808669080452 30.26025216341833 23.010553886449426 38-39 22.96497444983694 22.686362118994428 32.868551472665175 21.480111958503453 40-41 22.66004159926046 24.410677143517447 25.807590581105718 27.121690676116376 42-43 21.169401432863417 24.68543769098426 27.13388799013943 27.01127288601289 44-45 21.412063785532702 24.648203785019128 28.0705133143312 25.869219115116966 46-47 22.719744241583854 24.00752381686054 29.001360963459415 24.27137097809619 48-49 22.93544411062322 24.128213029299232 29.20550548237167 23.73083737770588 50-51 23.776416814318363 22.45653904424415 31.56472279998973 22.202321341447757 52-53 20.759828467247 25.15728115450787 28.507690727473488 25.57519965077164 54-55 22.594561281873506 24.259173664073135 28.21046144364841 24.93580361040495 56-57 22.33328197622166 24.43828159104332 27.70202603805562 25.526410394679406 58-59 20.580720540276815 25.480188994170966 28.337570295046604 25.60152017050561 60-61 20.80540790385949 25.02054284467042 27.791900983488688 26.38214826798141 62-63 20.590991962612023 25.751739722158025 27.705877821431322 25.951390493798627 64-65 20.843283773720568 25.692679043730582 27.36114320930591 26.102893973242946 66-67 19.782117453714402 25.208638266183907 24.756695683434764 30.252548596666923 68-69 20.259780284692482 25.44575497441363 25.161319319152213 29.13314542174167 70-71 19.969570911331946 25.52320057519965 24.674524304753103 29.8327042087153 72-73 19.63446575764579 24.888298282104614 23.86243997637573 31.61479598387387 74-75 21.508358369925276 26.42002413784249 25.737616516447115 26.33400097578512 76 21.765143928305474 26.251187633207508 25.50137380273733 26.482294635749685 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 3.0 14 5.5 15 13.0 16 24.0 17 28.0 18 45.0 19 85.5 20 140.5 21 172.0 22 213.5 23 309.0 24 432.5 25 502.0 26 602.5 27 745.0 28 908.5 29 1030.0 30 1197.5 31 1505.5 32 1831.5 33 2017.0 34 2093.0 35 2371.5 36 2686.0 37 2798.0 38 2886.0 39 3010.5 40 3132.0 41 3247.5 42 3278.0 43 3267.5 44 3289.0 45 3275.0 46 3229.0 47 3183.0 48 3051.5 49 2917.5 50 2869.0 51 2781.5 52 2614.0 53 2465.5 54 2397.0 55 2338.5 56 2198.5 57 2084.0 58 2051.0 59 1898.0 60 1710.0 61 1647.5 62 1620.0 63 1528.0 64 1384.0 65 1274.0 66 1175.0 67 1134.0 68 1084.5 69 966.5 70 865.5 71 833.0 72 772.5 73 639.5 74 504.5 75 442.0 76 393.5 77 319.0 78 254.5 79 216.0 80 177.5 81 118.5 82 77.5 83 57.0 84 53.0 85 37.0 86 19.5 87 14.0 88 13.5 89 10.0 90 4.0 91 1.0 92 1.0 93 1.5 94 1.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.016049097398762292 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 77886.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.10620650694605 #Duplication Level Percentage of deduplicated Percentage of total 1 98.2319299577286 96.37162006008782 2 1.625420423760977 3.189276635082043 3 0.12694507335331298 0.37362298744318617 4 0.011778408867833165 0.04622140050843541 5 0.003926136289277722 0.01925891687851475 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.002567855583801967 0.0 10 0.0 0.0 0.0 0.002567855583801967 0.0 11 0.0 0.0 0.0 0.0038517833757029506 0.0 12 0.0 0.0 0.0 0.0038517833757029506 0.0 13 0.0 0.0 0.0 0.0038517833757029506 0.0 14 0.0 0.0 0.0 0.005135711167603934 0.0 15 0.0 0.0 0.0 0.005135711167603934 0.0 16 0.0 0.0 0.0 0.007703566751405901 0.0 17 0.0 0.0 0.0 0.007703566751405901 0.0 18 0.0 0.0 0.0 0.008987494543306884 0.0 19 0.0 0.0 0.0 0.015407133502811803 0.0 20 0.0 0.0 0.0 0.016691061294712786 0.0 21 0.0 0.0 0.0 0.016691061294712786 0.0 22 0.0 0.0 0.0 0.02953033921372262 0.0 23 0.0 0.0 0.0 0.030814267005623605 0.0 24 0.0 0.0 0.0 0.03466605038132656 0.0 25 0.0 0.0 0.0 0.03723390596512852 0.0 26 0.0 0.0 0.0 0.03723390596512852 0.0 27 0.0 0.0 0.0 0.04622140050843541 0.0 28 0.0 0.0 0.0 0.060344606219346224 0.0 29 0.0 0.0 0.0 0.06676424517885114 0.0 30 0.0 0.0 0.0 0.08602316205736589 0.0 31 0.0 0.0 0.0 0.09501065660067277 0.0 32 0.0 0.0 0.0 0.10528207893588065 0.0 33 0.0 0.0 0.0 0.13352849035770228 0.0 34 0.0 0.0 0.0 0.16434275736332588 0.0 35 0.0 0.0 0.0 0.23752664150168196 0.0 36 0.0 0.0 0.0 0.2875998253858203 0.0 37 0.0 0.0 0.0 0.4275479547030275 0.0 38 0.0 0.0 0.0 0.5700639396040367 0.0 39 0.0 0.0 0.0 0.703592429961739 0.0 40 0.0 0.0 0.0 0.8679351873250648 0.0 41 0.0 0.0 0.0 1.0733636340292223 0.0 42 0.0 0.0 0.0 1.3327170479932209 0.0 43 0.0 0.0 0.0 1.5920704619572195 0.0 44 0.0 0.0 0.0 1.8848059985106438 0.0 45 0.0 0.0 0.0 2.110777289885217 0.0 46 0.0 0.0 0.0 2.36242713709781 0.0 47 0.0 0.0 0.0 2.6063734175589963 0.0 48 0.0 0.0 0.0 2.7565929692114115 0.0 49 0.0 0.0 0.0 2.9350589322856484 0.0 50 0.0 0.0 0.0 3.1713016459954293 0.0 51 0.0 0.0 0.0 3.4537657602136456 0.0 52 0.0 0.0 0.0 3.736229874431862 0.0 53 0.0 0.0 0.0 4.16506175692679 0.0 54 0.0 0.0 0.0 4.49117941606964 0.0 55 0.0 0.0 0.0 4.753100685617441 0.0 56 0.0 0.0 0.0 5.024009449708548 0.0 57 0.0 0.0 0.0 5.220450401869399 0.0 58 0.0 0.0 0.0 5.415607426238348 0.0 59 0.0 0.0 0.0 5.60049302827209 0.0 60 0.0 0.0 0.0 5.731453663045991 0.0 61 0.0 0.0 0.0 5.898364275993118 0.0 62 0.0 0.0 0.0 6.01776956063991 0.0 63 0.0 0.0012839277919009834 0.0 6.171840895668027 0.0 64 0.0 0.0012839277919009834 0.0 6.355442569909869 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGTTG 15 0.0022171 70.0 35 GACGCTC 15 0.0022171 70.0 14 CTAGCAC 15 0.0022171 70.0 3 ACGCTTC 25 2.377169E-4 56.000004 15 TATGCCG 20 0.0069278385 52.5 68 CGGTGGT 60 8.185452E-11 52.5 46 TGTGTCG 20 0.0069278385 52.5 35 GTGTCGA 35 2.0694217E-5 50.0 36 TCTCGGT 70 7.2759576E-12 50.0 43 CCGACGC 35 2.0694217E-5 50.0 21 TGGTCGC 35 2.0694217E-5 50.0 49 GTGGTCG 50 6.101982E-8 49.000004 48 CTCGGTG 80 0.0 48.125 44 CGCCGTA 30 5.8455067E-4 46.666664 53 TCGGTGG 75 7.385097E-10 42.000004 45 GGTGGTT 60 2.5583722E-7 40.833332 47 GCCGTAT 35 0.0012485727 40.0 54 AGATCTC 45 9.123092E-5 38.888885 40 ATCTCGG 65 4.792746E-7 37.692307 42 GTGGTTG 75 3.470086E-8 37.333336 48 >>END_MODULE