SRR1779694_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779694_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	77886
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	4821	6.189815884754641	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	616	0.7908995198110058	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	522	0.6702103073723134	RNA PCR Primer, Index 48 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	362	0.4647818606681561	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	277	0.3556479983565724	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	265	0.34024086485376065	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	215	0.27604447525871145	RNA PCR Primer, Index 48 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	98	0.12582492360629638	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	90	0.11555350127108852	No Hit
TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT	89	0.11426957347918754	RNA PCR Primer, Index 48 (95% over 22bp)
TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	89	0.11426957347918754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGAGCTA	15	0.0022171	70.0	44
GTGTTGC	20	0.0069278385	52.5	11
ACAAAGT	20	0.0069278385	52.5	12
AAACCTC	20	0.0069278385	52.5	67
TTTATAC	55	2.239176E-9	50.90909	3
TCTCGTA	890	0.0	44.4382	38
CTCGTAT	950	0.0	44.21053	39
TCGTATG	960	0.0	44.114582	40
TATGCCG	945	0.0	44.074074	43
TGCCGTC	950	0.0	43.842106	45
CGTCTTC	960	0.0	43.75	48
AATCTCG	890	0.0	43.651684	36
CGTATGC	955	0.0	43.612564	41
ATGCCGT	955	0.0	43.612564	44
TCAATCT	875	0.0	43.6	34
ATCTCGT	910	0.0	43.461536	37
CGTCAAT	880	0.0	43.352272	32
CTTCTGC	970	0.0	43.29897	51
GTCAATC	875	0.0	43.2	33
GTATGCC	965	0.0	43.16062	42