SRR1779693_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779693_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	32484
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	603	1.8562984854082012	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	266	0.8188646718384436	TruSeq Adapter, Index 2 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	121	0.3724910725280138	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	100	0.3078438615933998	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	96	0.2955301071296638	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	91	0.2801379140499939	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	37	0.11390222878955793	No Hit
TATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCT	35	0.10774535155768994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCCC	15	0.002205419	70.0	44
TCTACCC	15	0.002205419	70.0	40
AGGCATG	15	0.002205419	70.0	24
TGCGCCG	20	0.006891618	52.499996	46
TCTTTAT	20	0.006891618	52.499996	1
CTTTATA	20	0.006891618	52.499996	2
CGTCAGA	20	0.006891618	52.499996	2
AGCAGCG	20	0.006891618	52.499996	7
CTGATTT	35	0.0012378251	40.0	68
TCCTGGA	40	0.0023850703	34.999996	2
CGTATCT	180	0.0	33.055553	34
GTATCTC	180	0.0	33.055553	35
ACGTATC	180	0.0	33.055553	33
CACGTAT	180	0.0	33.055553	32
ATCTCGT	205	0.0	32.439026	37
TCTCGTA	205	0.0	32.439026	38
CGTCTTC	230	0.0	31.95652	48
TATCTCG	190	0.0	31.315788	36
AGCCCAT	45	0.0042476375	31.111109	7
CCGTCTT	240	0.0	30.625	47