##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779693_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 32484 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.02678241595863 34.0 34.0 34.0 31.0 34.0 2 33.24298115995567 34.0 34.0 34.0 32.0 34.0 3 33.358884373845584 34.0 34.0 34.0 33.0 34.0 4 33.41192587119813 34.0 34.0 34.0 34.0 34.0 5 33.333702745967244 34.0 34.0 34.0 33.0 34.0 6 36.53786479497599 38.0 37.0 38.0 34.0 38.0 7 36.64921191971432 38.0 37.0 38.0 34.0 38.0 8 36.26062061322497 38.0 37.0 38.0 34.0 38.0 9 36.26723925624923 38.0 37.0 38.0 34.0 38.0 10-11 36.181212289126954 38.0 37.0 38.0 34.0 38.0 12-13 36.209672454131265 38.0 37.0 38.0 34.0 38.0 14-15 36.28424762960226 38.0 37.0 38.0 34.0 38.0 16-17 36.14714936584164 38.0 36.5 38.0 33.5 38.0 18-19 36.25078500184706 38.0 37.0 38.0 34.0 38.0 20-21 36.27752124122645 38.0 37.0 38.0 34.0 38.0 22-23 36.083302548947174 38.0 36.0 38.0 32.5 38.0 24-25 36.06512436892008 38.0 36.0 38.0 32.0 38.0 26-27 35.877555104051225 38.0 36.0 38.0 31.5 38.0 28-29 35.743304396010345 38.0 36.0 38.0 31.0 38.0 30-31 35.65410663711366 38.0 36.0 38.0 31.0 38.0 32-33 35.66685137298362 38.0 36.0 38.0 31.0 38.0 34-35 35.6650504863933 38.0 36.0 38.0 31.0 38.0 36-37 35.70656323112917 38.0 36.0 38.0 31.0 38.0 38-39 35.74131880310307 38.0 36.0 38.0 31.0 38.0 40-41 35.7820311537988 38.0 36.0 38.0 31.0 38.0 42-43 35.808828961950496 38.0 36.0 38.0 31.5 38.0 44-45 35.774658293313635 38.0 36.0 38.0 31.0 38.0 46-47 35.81258465706194 38.0 36.0 38.0 31.0 38.0 48-49 35.814077699790666 38.0 36.0 38.0 31.0 38.0 50-51 35.783108607314375 38.0 36.0 38.0 31.0 38.0 52-53 35.76343738455856 38.0 36.0 38.0 31.0 38.0 54-55 35.756618643024254 38.0 36.0 38.0 31.0 38.0 56-57 35.7357622214013 38.0 36.0 38.0 31.0 38.0 58-59 35.712520009851005 38.0 36.0 38.0 31.0 38.0 60-61 35.756695603989655 38.0 36.0 38.0 31.0 38.0 62-63 35.65305996798424 38.0 36.0 38.0 31.0 38.0 64-65 35.64345523950253 38.0 36.0 38.0 31.0 38.0 66-67 35.607145056027576 38.0 36.0 38.0 31.0 38.0 68-69 35.431735623691665 38.0 36.0 38.0 31.0 38.0 70-71 35.12744735869967 38.0 36.0 38.0 27.5 38.0 72-73 34.90813939170053 38.0 36.0 38.0 26.0 38.0 74-75 34.909801748553136 38.0 36.0 38.0 26.5 38.0 76 33.855005541189506 37.0 34.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 0.0 21 2.0 22 2.0 23 8.0 24 23.0 25 40.0 26 70.0 27 111.0 28 216.0 29 373.0 30 575.0 31 1023.0 32 1466.0 33 2223.0 34 3310.0 35 4906.0 36 7280.0 37 10855.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.908878216968354 21.28124615195173 12.209087550794237 26.60078808028568 2 21.38899150350942 19.806674054919345 35.37741657431351 23.42691786725773 3 20.82871567540943 23.670114517916513 28.438615933998275 27.062553872675778 4 15.832409801748554 18.135081886467184 34.786356360054185 31.246151951730084 5 16.164881172269425 36.119320280753605 33.047038542051475 14.668760004925502 6 33.45031400073882 34.78327792143825 16.21413619012437 15.55227188769856 7 30.824405861347127 27.792143824652136 20.945696342814923 20.437753971185817 8 25.646472109346142 35.66063292697944 18.202807536017733 20.490087427656693 9 24.732175840413742 17.220785617534787 19.979066617411647 38.06797192463982 10-11 27.608976727004062 24.52745967245413 25.056951114394778 22.806612486147028 12-13 26.880925994335676 20.694803595616303 25.31861839674917 27.105652013298855 14-15 24.684460041866764 22.197081640192096 21.57985469769733 31.538603620243812 16-17 26.473032877724417 26.35451299101096 22.52185691417313 24.65059721709149 18-19 26.508434921807662 24.402782908508804 23.560829947050856 25.52795222263268 20-21 25.073882526782416 24.296576776259084 23.18833887452284 27.441201822435662 22-23 25.620305381110704 25.735746829208228 23.600849649058 25.043098140623076 24-25 26.777798300701882 25.6156877231868 23.396133481098385 24.210380495012927 26-27 26.539219307967 26.7116118704593 23.542359315355252 23.206809506218445 28-29 27.238024873784017 24.35506710996183 24.110331239995077 24.296576776259084 30-31 27.04100480236424 25.39557936214752 23.57930057874646 23.98411525674178 32-33 25.381726388375814 25.900443295160695 23.751693141238764 24.966137175224727 34-35 26.731621721462872 24.638283462627754 24.58902844477281 24.04106637113656 36-37 25.89890407585273 25.175471001108242 25.443295160694497 23.482329762344538 38-39 24.66137175224726 24.468969338751386 26.125169314123873 24.74448959487748 40-41 24.592106883388745 23.226819357222016 27.182612978697207 24.998460780692035 42-43 26.16364979682305 23.21912326068218 26.526905553503262 24.090321388991505 44-45 24.262713951483807 24.842999630587368 26.71315108976727 24.181135328161556 46-47 26.045129910109594 23.280692033000864 25.607991626646964 25.06618643024258 48-49 25.855805935229654 22.71118088905307 25.72651151336042 25.70650166235685 50-51 23.98411525674178 23.208348725526413 27.26727004063539 25.540265977096414 52-53 23.928703361654968 22.77890653860362 28.88498953330871 24.407400566432706 54-55 23.82095801009728 22.96976973279153 27.798300701884003 25.410971555227192 56-57 24.983068587612365 22.509543159709395 26.77471986208595 25.732668390592288 58-59 23.602388868365964 24.28272380248738 28.075360177318064 24.039527151828594 60-61 24.54900874276567 25.777305750523333 25.709580100972783 23.96410540573821 62-63 22.769671222755818 28.889607191232606 24.61057751508435 23.730144070927224 64-65 22.78814185445142 29.39754956286172 23.63471247383327 24.17959610885359 66-67 23.288388129540696 28.59561630341091 23.400751139022287 24.715244428026107 68-69 22.23556212289127 29.537618519886717 23.639330131757173 24.587489225464846 70-71 22.720416204900875 28.41552764437877 24.06107622214013 24.802979928580225 72-73 23.252986085457454 26.645425440216723 23.71321265853959 26.388375815786237 74-75 23.305319541928334 26.81627878340106 23.771702992242336 26.10669868242827 76 23.580839798054427 27.03176948651644 23.534663218815417 25.85272749661372 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 4.0 19 10.0 20 18.5 21 23.0 22 29.5 23 42.0 24 65.0 25 82.0 26 101.5 27 128.0 28 159.0 29 183.0 30 215.5 31 296.0 32 409.5 33 475.0 34 543.5 35 678.5 36 816.5 37 888.0 38 990.5 39 1212.5 40 1490.0 41 1804.0 42 1960.0 43 2113.0 44 2195.5 45 2041.0 46 1957.0 47 1824.5 48 1580.5 49 1348.0 50 1227.0 51 1163.0 52 966.0 53 786.0 54 739.0 55 679.0 56 574.0 57 488.5 58 448.0 59 393.0 60 357.5 61 397.0 62 417.0 63 415.0 64 444.0 65 473.5 66 496.5 67 521.0 68 546.0 69 582.5 70 611.5 71 629.0 72 573.5 73 508.0 74 470.0 75 442.0 76 390.5 77 301.0 78 239.5 79 216.0 80 183.0 81 126.5 82 80.0 83 57.0 84 48.5 85 35.0 86 20.5 87 11.0 88 9.0 89 5.0 90 2.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 32484.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.41275704962443 #Duplication Level Percentage of deduplicated Percentage of total 1 74.24632263702121 47.08164019209457 2 14.874508471285013 18.86467183844354 3 5.388611097626098 10.251200591060213 4 2.3739016457109567 6.021425932766901 5 1.1602504975969707 3.678734146041128 6 0.6844992475362881 2.6043590690801626 7 0.40778678576629934 1.810121906169191 8 0.24758483421525318 1.2560029553010712 9 0.174765765328414 0.9974141115626155 >10 0.41264139035875524 3.50326314493289 >50 0.014563813777367833 0.8835118827730575 >100 0.009709209184911888 1.1913557443664573 >500 0.004854604592455944 1.8562984854082012 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 603 1.8562984854082012 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 266 0.8188646718384436 TruSeq Adapter, Index 2 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 121 0.3724910725280138 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 100 0.3078438615933998 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 96 0.2955301071296638 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 91 0.2801379140499939 No Hit CTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 37 0.11390222878955793 No Hit TATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCT 35 0.10774535155768994 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0030784386159339984 0.0 20 0.0 0.0 0.0 0.006156877231867997 0.0 21 0.0 0.0 0.0 0.006156877231867997 0.0 22 0.0 0.0 0.0 0.006156877231867997 0.0 23 0.0 0.0 0.0 0.009235315847801994 0.0 24 0.0 0.0 0.0 0.009235315847801994 0.0 25 0.0 0.0 0.0 0.012313754463735994 0.0 26 0.0 0.0 0.0 0.012313754463735994 0.0 27 0.0 0.0 0.0 0.01847063169560399 0.0 28 0.0 0.0 0.0 0.027705947543405985 0.0 29 0.0 0.0 0.0 0.030784386159339983 0.0 30 0.0 0.0 0.0 0.03694126339120798 0.0 31 0.0 0.0 0.0 0.04001970200714198 0.0 32 0.0 0.0 0.0 0.04309814062307597 0.0 33 0.0 0.0 0.0 0.049255017854943975 0.0 34 0.0 0.0 0.0 0.08927471986208595 0.0 35 0.0 0.0 0.0 0.12929442186922793 0.0 36 0.0 0.0 0.0 0.19394163280384188 0.0 37 0.0 0.0 0.0 0.3663341952961458 0.0 38 0.0 0.0 0.0 0.47100110823790176 0.0 39 0.0 0.0 0.0 0.6280014776505356 0.0 40 0.0 0.0 0.0 0.8588843738455855 0.0 41 0.0 0.0 0.0 1.1482576037433814 0.0 42 0.0 0.0 0.0 1.4838074128801872 0.0 43 0.0 0.0 0.0 1.816278783401059 0.0 44 0.0 0.0 0.0 2.114887329146657 0.0 45 0.0 0.0 0.0 2.4904568402906047 0.0 46 0.0 0.0 0.0 2.8691047900504865 0.0 47 0.0 0.0 0.0 3.281615564585642 0.0 48 0.0 0.0 0.0 3.654106637113656 0.0 49 0.0 0.0 0.0 4.054303657185076 0.0 50 0.0 0.0 0.0 4.436030045560892 0.0 51 0.0 0.0 0.0 4.814677995320773 0.0 52 0.0 0.0 0.0 5.273365349094939 0.0 53 0.0 0.0 0.0 5.9075237039773425 0.0 54 0.0 0.0 0.0 6.400073882526782 0.0 55 0.0 0.0 0.0 6.846447481837212 0.0 56 0.0 0.0 0.0 7.262036694988302 0.0 57 0.0 0.0 0.0 7.579115872429504 0.0 58 0.0 0.0 0.0 7.930057874645979 0.0 59 0.0 0.0 0.0 8.314862701637729 0.0 60 0.0 0.0 0.0 8.721216598941018 0.0 61 0.0 0.0 0.0 9.084472355621228 0.0 62 0.0 0.0 0.0 9.552395025243197 0.0 63 0.0 0.0 0.0 10.060337396872306 0.0 64 0.0 0.0 0.0 10.58675040019702 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGGCCCC 15 0.002205419 70.0 44 TCTACCC 15 0.002205419 70.0 40 AGGCATG 15 0.002205419 70.0 24 TGCGCCG 20 0.006891618 52.499996 46 TCTTTAT 20 0.006891618 52.499996 1 CTTTATA 20 0.006891618 52.499996 2 CGTCAGA 20 0.006891618 52.499996 2 AGCAGCG 20 0.006891618 52.499996 7 CTGATTT 35 0.0012378251 40.0 68 TCCTGGA 40 0.0023850703 34.999996 2 CGTATCT 180 0.0 33.055553 34 GTATCTC 180 0.0 33.055553 35 ACGTATC 180 0.0 33.055553 33 CACGTAT 180 0.0 33.055553 32 ATCTCGT 205 0.0 32.439026 37 TCTCGTA 205 0.0 32.439026 38 CGTCTTC 230 0.0 31.95652 48 TATCTCG 190 0.0 31.315788 36 AGCCCAT 45 0.0042476375 31.111109 7 CCGTCTT 240 0.0 30.625 47 >>END_MODULE