FastQCFastQC Report
Wed 25 May 2016
SRR1779692_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779692_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43887
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTC150.002210621570.0000139
CTGCGCT150.002210621570.000014
CAGATCT150.002210621570.000017
TGTAGAT252.7956557E-670.0000137
ATGGCTG200.0069077552.50000432
GATCCGG200.0069077552.5000046
ACCCTGC200.0069077552.5000048
CCGCTCC200.0069077552.5000049
CGTGTAT200.0069077552.50000435
TGGGTTG350.001242608440.00000457
CGACGAA450.004263852731.11111322
GTGTAGA500.007136166628.00000236
CCGACGA1001.3593051E-524.50000221
TGCCGAC900.005197936719.44444519
CTGCCGA950.00710329718.42105318
Produced by FastQC (version 0.11.5)