##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779692_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 43887 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.62640417435687 34.0 32.0 34.0 21.0 34.0 2 28.47902567958621 34.0 23.0 34.0 12.0 34.0 3 27.645680953357488 33.0 23.0 34.0 11.0 34.0 4 30.718868913345638 34.0 32.0 34.0 23.0 34.0 5 29.803062410280948 34.0 31.0 34.0 11.0 34.0 6 32.58892154852234 37.0 31.0 38.0 12.0 38.0 7 33.621322943012736 37.0 34.0 38.0 22.0 38.0 8 32.88433932599631 37.0 33.0 38.0 12.0 38.0 9 34.5350103675348 38.0 34.0 38.0 26.0 38.0 10-11 34.27713218037232 38.0 34.5 38.0 24.0 38.0 12-13 32.999783534987586 37.5 31.0 38.0 19.0 38.0 14-15 33.332923189099276 37.0 33.0 38.0 21.5 38.0 16-17 32.92415749538588 37.5 31.0 38.0 18.5 38.0 18-19 33.31341855219085 37.0 33.0 38.0 22.0 38.0 20-21 32.3267026682161 36.5 30.0 38.0 17.0 38.0 22-23 32.32125686421948 36.5 29.0 38.0 18.0 38.0 24-25 33.97542552464283 37.0 34.0 38.0 24.5 38.0 26-27 32.077995761842914 37.0 29.5 38.0 16.0 38.0 28-29 34.737826691275316 37.5 35.0 38.0 26.5 38.0 30-31 35.220087953152415 38.0 36.0 38.0 27.0 38.0 32-33 35.337879098594115 38.0 37.0 38.0 29.0 38.0 34-35 35.41273042130927 38.0 37.0 38.0 31.0 38.0 36-37 32.651160936040284 37.0 30.5 38.0 17.0 38.0 38-39 30.342869186775125 35.0 25.0 38.0 11.0 38.0 40-41 32.17728484517055 36.5 29.5 38.0 16.0 38.0 42-43 33.5178640599722 37.0 32.5 38.0 19.0 38.0 44-45 35.389261056804976 38.0 36.5 38.0 31.0 38.0 46-47 33.539111809875365 37.5 32.0 38.0 21.0 38.0 48-49 32.76200241529382 37.0 30.5 38.0 18.0 38.0 50-51 30.2265363319434 35.0 24.5 38.0 11.0 38.0 52-53 34.431540091598876 37.0 35.0 38.0 25.5 38.0 54-55 33.290234010071316 37.0 31.5 38.0 19.0 38.0 56-57 33.78416159682821 37.5 33.5 38.0 20.0 38.0 58-59 35.199330097751044 38.0 36.0 38.0 29.0 38.0 60-61 35.68200150386219 38.0 37.0 38.0 31.0 38.0 62-63 35.51388793948094 38.0 37.0 38.0 29.5 38.0 64-65 35.14712785107207 38.0 36.5 38.0 27.5 38.0 66-67 32.75656800419259 37.0 32.5 38.0 15.0 38.0 68-69 32.72732244172534 37.0 32.5 38.0 16.0 38.0 70-71 32.1249344908515 37.0 29.5 38.0 15.0 38.0 72-73 30.80757399685556 35.5 26.0 38.0 11.0 38.0 74-75 33.40630482830906 37.0 32.5 38.0 22.5 38.0 76 34.13915282429877 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 18.0 14 49.0 15 95.0 16 177.0 17 241.0 18 313.0 19 333.0 20 337.0 21 324.0 22 334.0 23 396.0 24 407.0 25 485.0 26 552.0 27 783.0 28 884.0 29 1245.0 30 1649.0 31 2260.0 32 3029.0 33 4447.0 34 6039.0 35 8014.0 36 8004.0 37 3472.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.41515710802743 19.727937658076424 11.607081823774694 28.24982341012145 2 21.75587303757377 16.531091211520497 38.37127167498348 23.341764075922256 3 21.605486818420033 18.527126483924626 33.028003736869685 26.839382960785652 4 15.389523093398957 16.80224212181284 32.66343108437578 35.144803700412425 5 15.45332330758539 30.20028710096384 36.919816802242124 17.42657278920865 6 30.535238225442612 31.998085993574403 15.890810490578074 21.575865290404902 7 28.71921070020735 25.766172215006723 20.64620502654545 24.86841205824048 8 24.84562626745961 31.061589992480688 18.16255383143072 25.930229908628977 9 24.344338870280495 14.530498780960194 19.8190808211999 41.306081527559414 10-11 28.23843051473101 22.511222001959577 24.887779980404222 24.36256750290519 12-13 26.242694222596924 19.302063276861904 26.786141524158907 27.66910097638226 14-15 25.097409255588214 21.01077767903935 22.731104882994966 31.160708182377466 16-17 25.98605509604211 22.603504454622097 25.55540365028368 25.85503679905211 18-19 25.050698384487436 22.408685943445665 25.526921411807596 27.013694260259303 20-21 25.019937566933258 22.53058992412332 26.005423018205846 26.444049490737576 22-23 25.75477931961629 21.723972930480553 26.50784970492401 26.01339804497915 24-25 25.409574589286123 23.401007131952515 22.96124136988174 28.22817690887962 26-27 24.30674231549206 22.180828035636978 26.83482580262948 26.67760384624148 28-29 25.98719438558115 23.559368377879554 24.30674231549206 26.146694921047235 30-31 25.630596759860552 23.385057078405904 23.70633672841616 27.278009433317386 32-33 25.254631211976214 23.691525964408594 24.03673069473876 27.01711212887643 34-35 25.54515004443229 23.684690227174336 24.24066352222754 26.529496206165838 36-37 25.419828195137512 21.43915054571969 27.61637842641329 25.524642832729512 38-39 24.770433157882742 21.30471438011256 30.364344794586096 23.560507667418598 40-41 25.533757149041858 22.234374643972018 23.402146421491558 28.829721785494566 42-43 24.576753936245357 22.892883997539133 23.553671930184336 28.97669013603117 44-45 24.764736710187528 22.988584318818784 24.642832729509877 27.603846241483808 46-47 25.02677330416752 21.869801991478113 26.899765306354954 26.203659397999406 48-49 25.31273497846743 22.203613826417843 26.227584478319322 26.256066716795406 50-51 24.190534782509626 20.972041834711874 29.991797115318885 24.84562626745961 52-53 24.761318841570397 23.05352382254426 24.925376535192655 27.25978080069269 54-55 24.65992207259553 22.587554401075487 25.775286531319068 26.97723699500991 56-57 24.256613575774146 22.3938751794381 25.93478706678515 27.414724178002597 58-59 24.514093011597968 22.922505525554264 25.137284389454734 27.42611707339303 60-61 24.724861576321004 22.68667259097227 24.68612573199353 27.902340100713197 62-63 24.011666324879805 23.22099938478365 25.132727231298563 27.634607059037986 64-65 24.539157381456924 23.9774876387085 24.302185157335884 27.181169822498692 66-67 23.160617039214344 22.933898420944697 22.816551598423224 31.08893294141773 68-69 22.91915911809947 23.44556486070757 23.31681194097875 30.31846408021421 70-71 23.087702508715566 22.839337389204093 23.274545993118693 30.79841410896165 72-73 22.839337389204093 22.012213183858545 21.801444619135506 33.34700480780185 74-75 24.154077517260237 23.63000432930025 23.881787317428852 28.33413083601066 76 24.91170506072413 22.78579078086905 24.084580855378587 28.21792330302823 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 2.5 17 3.0 18 5.0 19 5.0 20 8.5 21 14.0 22 20.0 23 27.0 24 44.0 25 60.0 26 73.5 27 100.5 28 147.0 29 180.0 30 217.5 31 311.5 32 424.0 33 480.0 34 534.5 35 668.5 36 897.5 37 1047.0 38 1139.5 39 1393.0 40 1619.5 41 1764.0 42 1843.0 43 1917.0 44 2034.0 45 2049.5 46 2022.0 47 2039.5 48 2010.0 49 1835.0 50 1707.0 51 1605.5 52 1447.5 53 1318.5 54 1246.0 55 1205.0 56 1160.5 57 1139.5 58 1122.0 59 1150.0 60 1177.0 61 1220.5 62 1265.0 63 1262.0 64 1282.0 65 1275.5 66 1232.0 67 1218.0 68 1185.0 69 1067.0 70 886.5 71 791.0 72 737.5 73 611.0 74 484.0 75 430.0 76 375.5 77 278.0 78 189.0 79 143.0 80 118.0 81 84.0 82 52.0 83 29.0 84 23.5 85 16.5 86 11.0 87 7.0 88 3.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0011392895390434524 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.010253605851391073 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 43887.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 97.74420671269397 #Duplication Level Percentage of deduplicated Percentage of total 1 98.13739888570296 95.92362202930252 2 1.52691330396065 2.9849385922938456 3 0.25642818845140686 0.7519310957686787 4 0.05594796838939786 0.2187435914963429 5 0.01864932279646595 0.0911431631234762 6 0.002331165349558244 0.013671474468521431 7 0.002331165349558244 0.015950053546608334 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.002278579078086905 0.0 0.0 0.0 17 0.0 0.002278579078086905 0.0 0.0 0.0 18 0.0 0.002278579078086905 0.0 0.0 0.0 19 0.0 0.002278579078086905 0.0 0.006835737234260715 0.0 20 0.0 0.002278579078086905 0.0 0.00911431631234762 0.0 21 0.0 0.002278579078086905 0.0 0.011392895390434525 0.0 22 0.0 0.002278579078086905 0.0 0.01822863262469524 0.0 23 0.0 0.002278579078086905 0.0 0.01822863262469524 0.0 24 0.0 0.002278579078086905 0.0 0.025064369858955955 0.0 25 0.0 0.002278579078086905 0.0 0.029621528015129767 0.0 26 0.0 0.002278579078086905 0.0 0.029621528015129767 0.0 27 0.0 0.002278579078086905 0.0 0.04329300248365119 0.0 28 0.0 0.002278579078086905 0.0 0.04785016063982501 0.0 29 0.0 0.002278579078086905 0.0 0.05012873971791191 0.0 30 0.0 0.002278579078086905 0.0 0.05012873971791191 0.0 31 0.0 0.002278579078086905 0.0 0.05012873971791191 0.0 32 0.0 0.006835737234260715 0.0 0.05468589787408572 0.0 33 0.0 0.006835737234260715 0.0 0.05924305603025953 0.0 34 0.0 0.006835737234260715 0.0 0.06607879326452025 0.0 35 0.0 0.006835737234260715 0.0 0.08658600496730239 0.0 36 0.0 0.006835737234260715 0.0 0.12532184929477977 0.0 37 0.0 0.006835737234260715 0.0 0.19823637979356074 0.0 38 0.0 0.006835737234260715 0.0 0.2711509102923417 0.0 39 0.0 0.006835737234260715 0.0 0.38052270604051314 0.0 40 0.0 0.006835737234260715 0.0 0.5217946088819012 0.0 41 0.0 0.006835737234260715 0.0 0.6767379861918108 0.0 42 0.0 0.006835737234260715 0.0 0.8567457333606763 0.0 43 0.0 0.006835737234260715 0.0 1.0276391642171943 0.0 44 0.0 0.006835737234260715 0.0 1.2304327021669288 0.0 45 0.0 0.006835737234260715 0.0 1.389933237633012 0.0 46 0.0 0.006835737234260715 0.0 1.5790553011142252 0.0 47 0.0 0.006835737234260715 0.0 1.772734522751612 0.0 48 0.0 0.006835737234260715 0.0 1.94362795360813 0.0 49 0.0 0.006835737234260715 0.0 2.1031284890742135 0.0 50 0.0 0.006835737234260715 0.0 2.333264975960991 0.0 51 0.0 0.006835737234260715 0.0 2.654544625971244 0.0 52 0.0 0.006835737234260715 0.0 2.902909745482717 0.0 53 0.0 0.006835737234260715 0.0 3.190010709321667 0.0 54 0.0 0.006835737234260715 0.0 3.506733201175747 0.0 55 0.0 0.006835737234260715 0.0 3.723198213594003 0.0 56 0.0 0.006835737234260715 0.0 3.989791965730171 0.0 57 0.0 0.006835737234260715 0.0 4.251828559710165 0.0 58 0.0 0.006835737234260715 0.0 4.504750837377811 0.0 59 0.0 0.006835737234260715 0.0 4.796408959372935 0.0 60 0.0 0.006835737234260715 0.0 4.987809601932235 0.0 61 0.0 0.006835737234260715 0.0 5.174653086335361 0.0 62 0.0 0.006835737234260715 0.0 5.29313919839588 0.0 63 0.0 0.006835737234260715 0.0 5.4959327363456145 0.0 64 0.0 0.006835737234260715 0.0 5.657711850889785 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCGTC 15 0.0022106215 70.00001 39 CTGCGCT 15 0.0022106215 70.00001 4 CAGATCT 15 0.0022106215 70.00001 7 TGTAGAT 25 2.7956557E-6 70.00001 37 ATGGCTG 20 0.00690775 52.500004 32 GATCCGG 20 0.00690775 52.500004 6 ACCCTGC 20 0.00690775 52.500004 8 CCGCTCC 20 0.00690775 52.500004 9 CGTGTAT 20 0.00690775 52.500004 35 TGGGTTG 35 0.0012426084 40.000004 57 CGACGAA 45 0.0042638527 31.111113 22 GTGTAGA 50 0.0071361666 28.000002 36 CCGACGA 100 1.3593051E-5 24.500002 21 TGCCGAC 90 0.0051979367 19.444445 19 CTGCCGA 95 0.007103297 18.421053 18 >>END_MODULE