##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779692_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 43887 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.15011278966436 34.0 34.0 34.0 32.0 34.0 2 33.33896142365621 34.0 34.0 34.0 33.0 34.0 3 33.39544739900198 34.0 34.0 34.0 34.0 34.0 4 33.45428031079819 34.0 34.0 34.0 34.0 34.0 5 33.399024768154575 34.0 34.0 34.0 34.0 34.0 6 36.64114658099209 38.0 37.0 38.0 34.0 38.0 7 36.72718572698066 38.0 37.0 38.0 34.0 38.0 8 36.3828012851186 38.0 37.0 38.0 34.0 38.0 9 36.45703739148267 38.0 37.0 38.0 34.0 38.0 10-11 36.32102900631166 38.0 37.0 38.0 34.0 38.0 12-13 36.3663613370702 38.0 37.0 38.0 34.0 38.0 14-15 36.43662132294301 38.0 37.0 38.0 34.0 38.0 16-17 36.31101465126348 38.0 37.0 38.0 34.0 38.0 18-19 36.36769430583088 38.0 37.0 38.0 34.0 38.0 20-21 36.41173923941031 38.0 37.0 38.0 34.0 38.0 22-23 36.191389249663914 38.0 37.0 38.0 34.0 38.0 24-25 36.2052202246679 38.0 37.0 38.0 34.0 38.0 26-27 36.07405382003782 38.0 37.0 38.0 33.0 38.0 28-29 35.966208672271975 38.0 36.5 38.0 32.0 38.0 30-31 35.85584569462483 38.0 36.0 38.0 31.0 38.0 32-33 35.89220042381571 38.0 36.0 38.0 32.0 38.0 34-35 35.89033198897168 38.0 36.0 38.0 32.0 38.0 36-37 35.96242623100235 38.0 36.5 38.0 32.0 38.0 38-39 35.964602274021914 38.0 37.0 38.0 32.0 38.0 40-41 35.97802310479185 38.0 37.0 38.0 32.0 38.0 42-43 35.9592703989792 38.0 36.0 38.0 32.0 38.0 44-45 35.92762093558457 38.0 36.0 38.0 32.0 38.0 46-47 35.994201016246265 38.0 37.0 38.0 32.5 38.0 48-49 35.966823888623054 38.0 36.5 38.0 32.0 38.0 50-51 35.96328069815663 38.0 36.5 38.0 32.0 38.0 52-53 35.96393009319389 38.0 36.5 38.0 32.0 38.0 54-55 35.930753981816935 38.0 36.5 38.0 32.0 38.0 56-57 35.962585731537814 38.0 36.5 38.0 32.0 38.0 58-59 35.87797069747305 38.0 36.0 38.0 32.0 38.0 60-61 35.95085104928567 38.0 36.0 38.0 32.0 38.0 62-63 35.832547223551394 38.0 36.0 38.0 31.5 38.0 64-65 35.81885296329209 38.0 36.0 38.0 31.5 38.0 66-67 35.762811310866546 38.0 36.0 38.0 31.0 38.0 68-69 35.68099892906783 38.0 36.0 38.0 31.0 38.0 70-71 35.568437122610334 38.0 36.0 38.0 31.0 38.0 72-73 35.52552008567457 38.0 36.5 38.0 31.0 38.0 74-75 35.560131701870716 38.0 37.0 38.0 31.0 38.0 76 34.56021145213845 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 1.0 22 4.0 23 10.0 24 27.0 25 40.0 26 87.0 27 141.0 28 292.0 29 465.0 30 685.0 31 1144.0 32 1732.0 33 2663.0 34 3995.0 35 5891.0 36 9271.0 37 17435.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.29468863216898 20.616583498530318 11.771139517396952 26.317588351903755 2 22.10905279467724 20.122131838585457 32.55861644678378 25.21019891995352 3 21.657894137216033 22.273110488299498 27.878415020393284 28.19058035409119 4 16.18930434980746 17.576959008362387 33.33789049148951 32.895846150340645 5 16.948071182810402 34.09665732449245 32.3991159113177 16.556155581379453 6 33.467769498940456 33.713856039373844 16.893385284936315 15.92498917674938 7 30.218515733588536 27.766764645567026 20.308975322988584 21.70574429785586 8 26.00086586004967 34.258436439036615 18.224075466539066 21.516622234374644 9 25.137284389454734 15.369015881696175 19.87832387723016 39.61537585161893 10-11 28.755667965456745 23.22897441155695 24.13812746371363 23.877230159272678 12-13 27.510424499282248 19.621983730945384 24.38307471460797 28.4845170551644 14-15 25.589582336454985 21.246610613621346 21.253446350855608 31.910360699068065 16-17 27.325859593957208 24.55738601408162 21.834484015767767 26.282270376193406 18-19 26.96698338915852 23.65051154100303 22.867819627680177 26.51468544215827 20-21 25.50185704194864 23.845330052179463 22.487296921639665 28.165515984232233 22-23 26.614942921594093 24.31699592134345 22.611479481395403 26.456581675667053 24-25 27.324720304418165 24.53801809191788 22.265135461526192 25.872126142137763 26-27 26.327841957755144 24.991455328457175 23.03073803176339 25.64996468202429 28-29 25.890354774762457 24.5437145396131 23.855583658030852 25.710347027593595 30-31 26.30961332513045 23.792922733383463 24.236106364071368 25.661357577414723 32-33 27.2050949028186 23.776972679836852 23.740515414587463 25.27741700275708 34-35 26.753936245357394 24.01052703534076 24.51637159067605 24.71916512862579 36-37 27.145851846788343 24.07204867044911 23.11846332626974 25.663636156492807 38-39 25.622621733087247 23.40556429010869 24.509535853441793 26.46227812336227 40-41 25.64312894479003 22.995420056053046 24.763597420648484 26.597853578508442 42-43 26.69697176840522 23.025041584068177 24.486750062660924 25.79123658486568 44-45 25.531478569963774 23.715451044728507 24.85815845238909 25.894911932918628 46-47 26.585321393578965 22.68097614327705 24.18825620343154 26.545446259712442 48-49 26.270877480802973 22.52147560781097 24.12217741016702 27.085469501219038 50-51 25.620343154009163 22.457675393624534 25.021076856472302 26.900904595893998 52-53 24.841069109303437 22.711736960831225 26.1011233394855 26.34607059037984 54-55 25.00056964476952 22.901998313851482 25.394763825278556 26.702668216100438 56-57 25.690979105429857 22.823387335657483 24.91740150841935 26.56823205049331 58-59 24.761318841570397 23.362271287625035 25.841365324583588 26.035044546220977 60-61 25.71718276482785 24.09597375076902 24.216738441907626 25.9701050424955 62-63 23.975209059630416 25.75591860915533 23.822544261398594 26.44632806981566 64-65 24.268006471164583 26.43607446396427 22.90427689292957 26.391642171941577 66-67 24.764736710187528 25.522364253651425 23.011370109599653 26.701528926561398 68-69 24.130152436940325 26.382527855629228 23.117324036730693 26.36999567069975 70-71 23.909130266365892 26.071501811470366 23.03073803176339 26.988629890400347 72-73 24.282817235172146 24.792079659124568 23.15833846013626 27.766764645567026 74-75 24.004830587645547 24.85815845238909 23.7598833367512 27.377127623214164 76 24.37623897737371 24.731697313555266 23.428350080889558 27.46371362818147 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 1.0 12 0.0 13 0.0 14 0.5 15 3.0 16 5.0 17 5.0 18 6.0 19 8.5 20 11.5 21 13.0 22 22.0 23 47.0 24 83.0 25 103.0 26 118.5 27 154.5 28 201.5 29 228.0 30 263.5 31 323.5 32 467.5 33 587.0 34 630.5 35 711.5 36 863.5 37 978.0 38 1121.5 39 1609.5 40 2047.5 41 2076.5 42 2012.0 43 2012.0 44 2054.0 45 2043.0 46 1990.0 47 1938.5 48 1765.5 49 1615.5 50 1587.0 51 1492.0 52 1252.5 53 1094.5 54 1081.0 55 1039.5 56 959.5 57 940.0 58 959.0 59 936.5 60 978.0 61 1053.5 62 1065.0 63 1117.5 64 1194.0 65 1225.5 66 1241.0 67 1249.0 68 1183.0 69 1102.5 70 993.5 71 899.0 72 865.5 73 754.5 74 596.0 75 515.0 76 465.0 77 384.5 78 288.5 79 223.0 80 195.0 81 133.0 82 84.0 83 69.0 84 53.0 85 29.0 86 16.5 87 12.0 88 7.5 89 2.5 90 1.5 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 43887.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.61109212295213 #Duplication Level Percentage of deduplicated Percentage of total 1 71.7304868001576 45.628546038690274 2 17.358598703299066 22.083988424818283 3 5.505605903213096 10.506528129058719 4 2.2889278933982875 5.82404812359013 5 1.1784933911236881 3.748262583452959 6 0.6770068417093527 2.58390867455055 7 0.44775584769137083 1.9937566933260418 8 0.2686535086148225 1.367147446852143 9 0.14686391804276963 0.840795679814068 >10 0.3761149120607515 3.1467177068380163 >50 0.014328187126123867 0.6904094606603322 >100 0.007164093563061934 1.5858910383484859 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 499 1.1370109599653657 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 197 0.4488800783831203 RNA PCR Primer, Index 47 (95% over 21bp) TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 91 0.20735069610590837 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 87 0.19823637979356074 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 67 0.15266479823182263 No Hit TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 58 0.13215758652904047 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.002278579078086905 0.0 0.0 8 0.0 0.0 0.002278579078086905 0.0 0.0 9 0.0 0.0 0.002278579078086905 0.0 0.0 10 0.0 0.0 0.002278579078086905 0.0 0.0 11 0.0 0.0 0.002278579078086905 0.0 0.0 12 0.0 0.0 0.002278579078086905 0.0 0.0 13 0.0 0.0 0.002278579078086905 0.0 0.0 14 0.0 0.0 0.002278579078086905 0.0 0.0 15 0.0 0.0 0.002278579078086905 0.0 0.0 16 0.0 0.0 0.002278579078086905 0.0 0.0 17 0.0 0.0 0.002278579078086905 0.0 0.0 18 0.0 0.0 0.002278579078086905 0.0 0.0 19 0.0 0.0 0.002278579078086905 0.00911431631234762 0.0 20 0.0 0.0 0.002278579078086905 0.011392895390434525 0.0 21 0.0 0.0 0.002278579078086905 0.015950053546608334 0.0 22 0.0 0.0 0.002278579078086905 0.015950053546608334 0.0 23 0.0 0.0 0.002278579078086905 0.015950053546608334 0.0 24 0.0 0.0 0.002278579078086905 0.015950053546608334 0.0 25 0.0 0.0 0.002278579078086905 0.015950053546608334 0.0 26 0.0 0.0 0.002278579078086905 0.01822863262469524 0.0 27 0.0 0.0 0.002278579078086905 0.025064369858955955 0.0 28 0.0 0.0 0.002278579078086905 0.03190010709321667 0.0 29 0.0 0.0 0.002278579078086905 0.03645726524939048 0.0 30 0.0 0.0 0.002278579078086905 0.04101442340556429 0.0 31 0.0 0.0 0.002278579078086905 0.0455715815617381 0.0 32 0.0 0.0 0.002278579078086905 0.06607879326452025 0.0 33 0.0 0.0 0.002278579078086905 0.07063595142069405 0.0 34 0.0 0.0 0.002278579078086905 0.08658600496730239 0.0 35 0.0 0.0 0.002278579078086905 0.1298790074509536 0.0 36 0.0 0.0 0.002278579078086905 0.26203659397999407 0.0 37 0.0 0.0 0.002278579078086905 0.38507986419668694 0.0 38 0.0 0.0 0.002278579078086905 0.5217946088819012 0.0 39 0.0 0.0 0.002278579078086905 0.6926880397384191 0.0 40 0.0 0.0 0.002278579078086905 0.9091530521566751 0.0 41 0.0 0.0 0.002278579078086905 1.1119465901064096 0.0 42 0.0 0.0 0.002278579078086905 1.3717046050083168 0.0 43 0.0 0.0 0.002278579078086905 1.6200697245197895 0.0 44 0.0 0.0 0.002278579078086905 1.9276779000615216 0.0 45 0.0 0.0 0.002278579078086905 2.2603504454622096 0.0 46 0.0 0.0 0.002278579078086905 2.645430309658897 0.0 47 0.0 0.0 0.002278579078086905 2.927974115341673 0.0 48 0.0 0.0 0.002278579078086905 3.208239341946362 0.0 49 0.0 0.0 0.002278579078086905 3.5636976781279195 0.0 50 0.0 0.0 0.002278579078086905 3.859912958279217 0.0 51 0.0 0.0 0.002278579078086905 4.251828559710165 0.0 52 0.0 0.0 0.002278579078086905 4.609565474969809 0.0 53 0.0 0.0 0.002278579078086905 4.942238020370497 0.0 54 0.0 0.0 0.002278579078086905 5.270353407615011 0.0 55 0.0 0.0 0.002278579078086905 5.596190215781439 0.0 56 0.0 0.0 0.002278579078086905 5.990384396290473 0.0 57 0.0 0.0 0.002278579078086905 6.3731856814090735 0.0 58 0.0 0.0 0.002278579078086905 6.767379861918108 0.0 59 0.0 0.0 0.002278579078086905 7.195752728598446 0.0 60 0.0 0.0 0.002278579078086905 7.603618383576002 0.0 61 0.0 0.0 0.002278579078086905 8.00236972224121 0.0 62 0.0 0.0 0.002278579078086905 8.330485109485725 0.0 63 0.0 0.0 0.002278579078086905 8.75430081800989 0.0 64 0.0 0.0 0.002278579078086905 9.132544944972315 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTCT 20 0.00690775 52.500004 50 TGGACGC 20 0.00690775 52.500004 5 TCCTGAG 20 0.00690775 52.500004 45 CTGAGCG 20 0.00690775 52.500004 47 TAGTTCT 20 0.00690775 52.500004 45 CTAACTA 20 0.00690775 52.500004 23 CAGGATA 20 0.00690775 52.500004 20 GACGGTT 20 0.00690775 52.500004 32 CACACCA 20 0.00690775 52.500004 35 TTCGCCG 20 0.00690775 52.500004 49 TCAAGGG 20 0.00690775 52.500004 5 CCTTGGC 20 0.00690775 52.500004 38 TAACTAC 20 0.00690775 52.500004 24 ACGGTTT 20 0.00690775 52.500004 33 CAAGACC 40 0.0023942306 35.000004 4 ATTTCCT 40 0.0023942306 35.000004 42 CGGGCAG 45 0.0042638527 31.111113 16 GTATTAG 50 0.0071361666 28.000002 1 TAGGATG 50 0.0071361666 28.000002 5 TAGATCT 150 8.240022E-10 25.666668 34 >>END_MODULE