FastQCFastQC Report
Wed 25 May 2016
SRR1779690_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779690_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91981
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAAACG150.002218382470.0000149
AATCCGA200.006931815852.524
GTGTATA200.006931815852.536
ACGCTAA200.006931815852.539
GCTACCG200.006931815852.570
ACACCGG350.001249754240.036
TGTATCT350.001249754240.070
ACGCGAA501.6982987E-435.070
CTGTATC501.6982987E-435.069
CCGTCAC400.002407915435.014
GCTTATA400.002407915435.047
TTAGTGG400.002407915435.022
CCGCCTA400.002407915435.021
TGTAAGC400.002407915435.049
CCAATGG500.00717646127.99999826
CCTTCCC900.00524075919.44444341
CCGACGC1000.00962474117.567
TCTCTTC1503.119746E-416.33333467
ATACACC1807.037213E-515.55555463
CCCCTCT1400.003719055815.07
Produced by FastQC (version 0.11.5)