SRR1779690_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779690_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	91981
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	2811	3.0560659266587664	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	379	0.4120416172905274	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	365	0.3968210826148878	RNA PCR Primer, Index 42 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	179	0.19460540763853407	RNA PCR Primer, Index 32 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	164	0.17829769191463454	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	159	0.1728617866733347	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	156	0.16960024352855482	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	116	0.12611300159815614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAGA	15	0.0022183824	70.00001	21
AAGTATT	20	0.0069318158	52.5	15
GCAAAGT	20	0.0069318158	52.5	53
ACCCATA	20	0.0069318158	52.5	8
TTCCTTA	20	0.0069318158	52.5	19
CTCTAGC	30	5.8510725E-4	46.666668	2
AACCAGT	35	0.0012497542	40.0	24
TCAATTA	35	0.0012497542	40.0	28
TTTATAC	35	0.0012497542	40.0	3
ATGCCGT	575	0.0	38.95652	44
CTTTATA	45	9.13602E-5	38.888885	2
CTCGTAT	570	0.0	38.68421	39
GTCTTCT	570	0.0	38.68421	49
GTATGCC	580	0.0	38.62069	42
TCGTATG	585	0.0	38.2906	40
CCGTCTT	570	0.0	38.070175	47
GCCGTCT	580	0.0	38.017242	46
TCTCGTA	525	0.0	38.0	38
CGTATGC	590	0.0	37.9661	41
TATGCCG	590	0.0	37.9661	43