##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779690_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 91981 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.21908872484535 34.0 34.0 34.0 32.0 34.0 2 33.3571389743534 34.0 34.0 34.0 33.0 34.0 3 33.40942151096422 34.0 34.0 34.0 34.0 34.0 4 33.46563964296974 34.0 34.0 34.0 34.0 34.0 5 33.43822093693263 34.0 34.0 34.0 34.0 34.0 6 36.742077168110804 38.0 37.0 38.0 34.0 38.0 7 36.803839923462455 38.0 37.0 38.0 34.0 38.0 8 36.51179047846838 38.0 37.0 38.0 34.0 38.0 9 36.57439036322719 38.0 37.0 38.0 34.0 38.0 10-11 36.433464519846495 38.0 37.0 38.0 34.0 38.0 12-13 36.47935443189354 38.0 37.0 38.0 34.0 38.0 14-15 36.537475130733526 38.0 37.0 38.0 34.0 38.0 16-17 36.43070307998391 38.0 37.0 38.0 34.0 38.0 18-19 36.45993194246638 38.0 37.0 38.0 34.0 38.0 20-21 36.49411291462367 38.0 37.0 38.0 34.0 38.0 22-23 36.321571846359575 38.0 37.0 38.0 34.0 38.0 24-25 36.32660549461302 38.0 37.0 38.0 34.0 38.0 26-27 36.187332166425676 38.0 37.0 38.0 34.0 38.0 28-29 36.06909579152216 38.0 37.0 38.0 33.0 38.0 30-31 35.978930431284724 38.0 37.0 38.0 32.0 38.0 32-33 35.98317587327818 38.0 37.0 38.0 32.0 38.0 34-35 35.923957121579456 38.0 37.0 38.0 32.0 38.0 36-37 36.050521303312635 38.0 37.0 38.0 32.5 38.0 38-39 35.8462671638708 38.0 37.0 38.0 32.0 38.0 40-41 36.02832106630717 38.0 37.0 38.0 32.5 38.0 42-43 36.08282145225644 38.0 37.0 38.0 33.5 38.0 44-45 36.07967949902697 38.0 37.0 38.0 33.0 38.0 46-47 36.11831247757689 38.0 37.0 38.0 33.5 38.0 48-49 36.09532403431143 38.0 37.0 38.0 33.5 38.0 50-51 36.06709537839336 38.0 37.0 38.0 33.0 38.0 52-53 36.0475152477142 38.0 37.0 38.0 33.0 38.0 54-55 36.05280438351399 38.0 37.0 38.0 33.0 38.0 56-57 36.061746447635926 38.0 37.0 38.0 33.0 38.0 58-59 36.01793848729629 38.0 37.0 38.0 32.5 38.0 60-61 36.05594633674346 38.0 37.0 38.0 33.0 38.0 62-63 35.99550450636545 38.0 37.0 38.0 32.0 38.0 64-65 35.965226514171405 38.0 37.0 38.0 32.0 38.0 66-67 35.95868712016612 38.0 37.0 38.0 32.0 38.0 68-69 35.832454528652654 38.0 36.0 38.0 31.0 38.0 70-71 35.50137528402605 38.0 36.0 38.0 30.0 38.0 72-73 35.08846392189692 38.0 36.0 38.0 27.0 38.0 74-75 35.080337243561175 38.0 36.0 38.0 27.0 38.0 76 34.12885269783977 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 5.0 22 19.0 23 20.0 24 58.0 25 84.0 26 186.0 27 302.0 28 557.0 29 934.0 30 1492.0 31 2338.0 32 3601.0 33 5266.0 34 8033.0 35 12028.0 36 18173.0 37 38885.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.58141355279895 19.138735173568456 10.940302888640046 28.339548384992554 2 21.893651949859212 19.336602124351767 34.07877713875692 24.690968787032105 3 21.033691740685576 21.28156901968885 29.806155619095247 27.87858362053033 4 16.123982126743567 18.856068101020863 33.07530903121297 31.9446407410226 5 16.175079636011784 33.70369967710723 34.13857209641121 15.98264859046977 6 32.59042628368902 35.17574281645122 16.447962079125038 15.785868820734716 7 30.0736021569672 27.587219099596656 19.508376729976842 22.8308020134593 8 26.140181124362638 35.30729172329068 17.609071438666682 20.94345571368 9 24.680096976549503 15.822832976375556 19.141996716713233 40.355073330361705 10-11 27.50024461573586 24.229460432045748 24.93341016079408 23.336884791424318 12-13 26.52286885335015 20.010110783748818 25.46884682706211 27.998173535838923 14-15 24.954610191235147 21.060327676367947 20.729824637696918 33.25523749469999 16-17 27.51437796936324 25.674867635707376 21.67349778758657 25.137256607342824 18-19 27.0985312184038 23.52659788434568 22.777530142094562 26.597340755155958 20-21 24.738804753155545 23.264587251715028 22.66120176993075 29.335406225198685 22-23 25.401985192594122 25.381328752677184 22.682945390895945 26.53374066383275 24-25 27.320859742772964 25.50744175427534 22.58455550602842 24.587142996923276 26-27 26.533197073308617 26.091801567715073 23.267305204335678 24.10769615464063 28-29 24.56159424228917 25.950468031441275 23.782085430686774 25.705852295582783 30-31 24.463204357421642 23.417879779519684 25.699872799817353 26.419043063241322 32-33 24.075624313716965 25.55310335830226 23.401572063795783 26.969700264184993 34-35 25.224774681727745 23.148802470075342 25.531359737337056 26.09506311085985 36-37 27.06537219643187 24.651286678770614 23.479849099270503 24.80349202552701 38-39 24.315891325382417 23.544536371641968 25.937965449386287 26.201606853589325 40-41 24.304475924375687 22.516063099988042 26.623976690838326 26.55548428479795 42-43 26.500038051336688 22.56335547558735 26.346745523532032 24.589860949543926 44-45 23.94081386373273 24.645850773529315 26.893597590806795 24.51973777193116 46-47 26.312499320511844 22.344832084887095 24.654548221915395 26.688120372685663 48-49 25.81293962883639 22.143703590959003 24.730650895293593 27.312705884911015 50-51 23.661951924854048 22.095867624835563 27.179526206499165 27.062654243811224 52-53 23.20261793196421 22.042052162946696 29.731683717289442 25.023646187799653 54-55 22.711212098150703 22.390493688914013 27.873691305813157 27.024602907122127 56-57 24.90623063458758 22.31873973972886 25.644970156880227 27.130059468803342 58-59 22.91125341103054 22.836781509224732 28.912492797425553 25.339472282319175 60-61 24.654004631391267 25.136169426294565 24.870353659994997 25.339472282319175 62-63 22.352985942749047 28.210717430773748 23.954403626835976 25.481892999641232 64-65 22.121959969993803 29.03425707483067 23.23795131603266 25.605831639142867 66-67 22.469857905436992 28.885313271219054 22.82210456507322 25.82272425827073 68-69 22.023570085126277 28.991857013948536 23.026494602146094 25.958078298779096 70-71 22.53182722518781 28.171035322512257 23.098792141855384 26.198345310444548 72-73 22.16164207825529 26.969156673660866 23.133581935399704 27.73561931268414 74-75 22.236113980061102 26.745740968243442 23.345582239810394 27.672562811885065 76 22.85906872071406 26.16409910742436 23.629880083930377 27.346952087931204 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 1.0 15 3.0 16 9.5 17 13.0 18 14.5 19 21.5 20 35.5 21 44.0 22 60.5 23 104.0 24 185.0 25 239.0 26 257.0 27 318.0 28 429.5 29 498.0 30 589.5 31 758.0 32 1037.5 33 1240.0 34 1397.0 35 1693.0 36 1998.0 37 2164.0 38 2408.0 39 2949.5 40 4078.5 41 5180.0 42 5450.0 43 5326.5 44 5055.5 45 4686.0 46 4464.0 47 4317.0 48 3968.0 49 3661.5 50 3557.0 51 3298.5 52 2833.5 53 2535.0 54 2443.0 55 2348.0 56 2204.5 57 2066.0 58 1976.0 59 1974.0 60 1982.5 61 2020.0 62 2047.0 63 2062.0 64 2099.5 65 2082.0 66 2024.5 67 2007.0 68 1916.5 69 1751.0 70 1598.0 71 1520.0 72 1392.0 73 1209.5 74 1035.5 75 916.0 76 820.0 77 639.5 78 468.5 79 382.0 80 367.0 81 283.0 82 177.0 83 140.0 84 104.0 85 60.0 86 42.0 87 32.0 88 22.0 89 11.0 90 8.0 91 3.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 91981.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.336841304182386 #Duplication Level Percentage of deduplicated Percentage of total 1 68.50528072204631 39.27876409258434 2 18.838051536813364 21.60228742892554 3 6.334970325565521 10.896815646709648 4 2.398604448320977 5.501136104195432 5 1.2154193291492066 3.484415259673193 6 0.6920874495155388 2.3809264956893275 7 0.5517738296137583 2.214587795305552 8 0.3602646997478147 1.6525151933551494 9 0.23701624983408862 1.2230786792924626 >10 0.8399855894120101 6.650286472206217 >50 0.011376779992036254 0.4087800741457475 >100 0.013272909990708962 1.6503408312586294 >500 0.0 0.0 >1k 0.0018961299986727089 3.0560659266587664 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 2811 3.0560659266587664 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 379 0.4120416172905274 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 365 0.3968210826148878 RNA PCR Primer, Index 42 (95% over 22bp) CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 179 0.19460540763853407 RNA PCR Primer, Index 32 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 164 0.17829769191463454 No Hit CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 159 0.1728617866733347 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 156 0.16960024352855482 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 116 0.12611300159815614 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0021743620965199335 0.0 2 0.0 0.0 0.0 0.0021743620965199335 0.0 3 0.0 0.0 0.0 0.0021743620965199335 0.0 4 0.0 0.0 0.0 0.0021743620965199335 0.0 5 0.0 0.0 0.0 0.0021743620965199335 0.0 6 0.0 0.0 0.0 0.0021743620965199335 0.0 7 0.0 0.0 0.0 0.0021743620965199335 0.0 8 0.0 0.0 0.0 0.0021743620965199335 0.0 9 0.0 0.0 0.0 0.0021743620965199335 0.0 10 0.0 0.0 0.0 0.004348724193039867 0.0 11 0.0 0.0 0.0 0.005435905241299834 0.0 12 0.0 0.0 0.0 0.005435905241299834 0.0 13 0.0 0.0 0.0 0.007610267337819767 0.0 14 0.0 0.0 0.0 0.007610267337819767 0.0 15 0.0 0.0 0.0 0.007610267337819767 0.0 16 0.0 0.0 0.0 0.008697448386079734 0.0 17 0.0 0.0 0.0 0.009784629434339701 0.0 18 0.0 0.0 0.0 0.010871810482599668 0.0 19 0.0 0.0 0.0 0.018482077820419433 0.0 20 0.0 0.0 0.0 0.020656439916939367 0.0 21 0.0 0.0 0.0 0.020656439916939367 0.0 22 0.0 0.0 0.0 0.021743620965199335 0.0 23 0.0 0.0 0.0 0.02391798306171927 0.0 24 0.0 0.0 0.0 0.02391798306171927 0.0 25 0.0 0.0 0.0 0.026092345158239202 0.0 26 0.0 0.0 0.0 0.026092345158239202 0.0 27 0.0 0.0 0.0 0.039138517737358804 0.0 28 0.0 0.0 0.0 0.05762059555777824 0.0 29 0.0 0.0 0.0 0.07610267337819768 0.0 30 0.0 0.0 0.0 0.10110783748817691 0.0 31 0.0 0.0 0.0 0.13154890683945597 0.0 32 0.0 0.0 0.0 0.1663387003837749 0.0 33 0.0 0.0 0.0 0.21743620965199334 0.0 34 0.0 0.0 0.0 0.28049271045107144 0.0 35 0.0 0.0 0.0 0.3739902806014286 0.0 36 0.0 0.0 0.0 0.5479392483230232 0.0 37 0.0 0.0 0.0 0.8045139757123754 0.0 38 0.0 0.0 0.0 1.0882682293082266 0.0 39 0.0 0.0 0.0 1.376371207097118 0.0 40 0.0 0.0 0.0 1.7101357889129276 0.0 41 0.0 0.0 0.0 2.1417466650721346 0.0 42 0.0 0.0 0.0 2.6070601537274003 0.0 43 0.0 0.0 0.0 3.0897685391548255 0.0 44 0.0 0.0 0.0 3.5855230971613703 0.0 45 0.0 0.0 0.0 4.196518846283472 0.0 46 0.0 0.0 0.0 4.833606940563812 0.0 47 0.0 0.0 0.0 5.390243637272915 0.0 48 0.0 0.0 0.0 5.966449592850697 0.0 49 0.0 0.0 0.0 6.52634783270458 0.0 50 0.0 0.0 0.0 7.047107554821104 0.0 51 0.0 0.0 0.0 7.52981594024853 0.0 52 0.0 0.0 0.0 8.081016731716332 0.0 53 0.0 0.0 0.0 8.609386721170676 0.0 54 0.0 0.0 0.0 9.204074754568879 0.0 55 0.0 0.0 0.0 9.699829312575423 0.0 56 0.0 0.0 0.0 10.224937758884987 0.0 57 0.0 0.0 0.0 10.76526673987019 0.0 58 0.0 0.0 0.0 11.312118807144953 0.0 59 0.0 0.0 0.0 11.76547330426936 0.0 60 0.0 0.0 0.0 12.291668931627184 0.0 61 0.0 0.0 0.0 12.798295300116328 0.0 62 0.0 0.0 0.0 13.312531935943293 0.0 63 0.0 0.0 0.0 13.858296822169796 0.0 64 0.0 0.0 0.0 14.36927191485198 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGAGA 15 0.0022183824 70.00001 21 AAGTATT 20 0.0069318158 52.5 15 GCAAAGT 20 0.0069318158 52.5 53 ACCCATA 20 0.0069318158 52.5 8 TTCCTTA 20 0.0069318158 52.5 19 CTCTAGC 30 5.8510725E-4 46.666668 2 AACCAGT 35 0.0012497542 40.0 24 TCAATTA 35 0.0012497542 40.0 28 TTTATAC 35 0.0012497542 40.0 3 ATGCCGT 575 0.0 38.95652 44 CTTTATA 45 9.13602E-5 38.888885 2 CTCGTAT 570 0.0 38.68421 39 GTCTTCT 570 0.0 38.68421 49 GTATGCC 580 0.0 38.62069 42 TCGTATG 585 0.0 38.2906 40 CCGTCTT 570 0.0 38.070175 47 GCCGTCT 580 0.0 38.017242 46 TCTCGTA 525 0.0 38.0 38 CGTATGC 590 0.0 37.9661 41 TATGCCG 590 0.0 37.9661 43 >>END_MODULE