FastQCFastQC Report
Wed 25 May 2016
SRR1779689_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779689_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348764
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCCGT350.001254655139.99942452
TCGGTGG701.9219442E-839.99942445
CTCGGTG1151.8189894E-1236.52121744
CTCTCGG601.2142415E-534.999542
GTCGATC400.00241730134.99949638
CGTTGGT501.70819E-434.99949646
CCGCGAA400.00241730134.99949670
TCTCGGT1154.0017767E-1133.47778343
AGCCGAG957.612471E-933.1574212
TGGTCGC652.1000515E-532.3072349
CCTACGA552.9894628E-431.81772421
CTGCGAG500.00720409627.999660
TTCGGTG500.00720409627.999644
TCGCTTA906.1600986E-627.22183248
CGTATCA657.948827E-426.92269156
CGTCAGA808.6545326E-526.2496241
GTGGTCG1101.0136337E-625.4541848
GGTCGCC700.001224944324.9996450
CGGTGTT700.001224944324.9996446
TCGGTGT1001.39528765E-524.4996545
Produced by FastQC (version 0.11.5)