SRR1779689_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779689_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348764
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	3925	1.1254028512117078	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	569	0.16314757257056348	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	518	0.1485245036758381	RNA PCR Primer, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAC	20	0.0069479984	52.5	8
TCTCGTA	750	0.0	43.86667	38
TATGCCG	790	0.0	43.417725	43
GCCGTCT	790	0.0	42.974686	46
CCGTCTT	795	0.0	42.704403	47
CGTATGC	805	0.0	42.608696	41
TCGTATG	815	0.0	42.51534	40
ATGCCGT	800	0.0	42.4375	44
TGCCGTC	805	0.0	42.173912	45
ATCTCGT	785	0.0	41.910828	37
CTCGTAT	820	0.0	41.82927	39
GTATGCC	845	0.0	41.42012	42
CGTCTTC	840	0.0	41.25	48
AATCTCG	775	0.0	38.83871	36
CTGCTTG	970	0.0	35.72165	54
GTTAATC	795	0.0	35.220127	33
GTCTTCT	985	0.0	35.177666	49
ACACGTA	40	0.0024171313	35.0	44
TGCTTGA	985	0.0	34.822334	55
GCTTGAA	1015	0.0	34.13793	56