FastQCFastQC Report
Wed 25 May 2016
SRR1779688_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779688_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33808
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTGTAT150.002206217570.01
TAAAAGG150.002206217570.014
GTGGTCG252.3578743E-455.99999648
AGAGTAA200.00689409452.550
GGTGGTC404.500393E-543.7547
TGGTGGT400.002386475735.046
Produced by FastQC (version 0.11.5)