SRR1779688_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779688_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33808
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	943	2.7892806436346427	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	300	0.8873639375295789	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	138	0.4081874112636063	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	113	0.33424041646947467	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	100	0.2957879791765263	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	92	0.2721249408424042	No Hit
TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT	53	0.15676762896355892	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	45	0.13310459062943683	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	37	0.10944155229531471	No Hit
TTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	36	0.10648367250354945	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	35	0.10352579271178418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGGT	15	0.0022062175	70.0	4
TTTATAC	25	2.3578743E-4	55.999996	3
AAGAGAT	20	0.006894094	52.5	6
ATCAAAA	20	0.006894094	52.5	55
CACACTA	20	0.006894094	52.5	35
AAAGAAG	20	0.006894094	52.5	57
CTATACA	50	3.3813612E-6	42.0	1
ATCTCGT	255	0.0	32.941177	37
TCTCGTA	255	0.0	32.941177	38
CGTATGC	270	0.0	32.407406	41
CTCGTAT	270	0.0	32.407406	39
AGATCTC	240	0.0	32.083332	35
TGCTTGA	275	0.0	31.818182	55
TATGCCG	275	0.0	31.818182	43
GTATGCC	275	0.0	31.818182	42
TCGTATG	275	0.0	31.818182	40
AAGATCT	245	0.0	31.42857	34
CTGCTTG	280	0.0	31.25	54
CGTCTTC	280	0.0	31.25	48
GCTTGAA	280	0.0	31.25	56