##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779687_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18492 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.00654337010599 33.0 23.0 34.0 12.0 34.0 2 26.786988968202465 32.0 21.0 34.0 12.0 34.0 3 26.23193813540991 32.0 21.0 34.0 11.0 34.0 4 27.900605667315595 33.0 23.0 34.0 12.0 34.0 5 27.565704088254382 33.0 23.0 34.0 11.0 34.0 6 29.83609128271685 36.0 23.0 38.0 11.0 38.0 7 30.907906121566082 37.0 26.0 38.0 12.0 38.0 8 30.168829764222366 36.0 24.0 38.0 11.0 38.0 9 31.48896820246593 37.0 27.0 38.0 12.0 38.0 10-11 31.094202898550726 37.0 26.0 38.0 11.0 38.0 12-13 30.41547696301103 35.5 25.0 38.0 11.0 38.0 14-15 30.20035691109669 36.0 24.5 38.0 11.0 38.0 16-17 29.990590525632705 35.5 24.0 38.0 11.0 38.0 18-19 30.52433484750162 36.0 25.5 38.0 11.0 38.0 20-21 29.623729180186025 35.0 23.5 38.0 11.0 38.0 22-23 29.542775254163963 35.5 23.5 38.0 11.0 38.0 24-25 30.57205818732425 36.5 24.5 38.0 11.0 38.0 26-27 29.171641791044777 35.0 22.0 38.0 11.0 38.0 28-29 30.944705818732423 37.0 26.0 38.0 11.0 38.0 30-31 31.40893359290504 37.5 26.5 38.0 11.0 38.0 32-33 31.571679645252 38.0 27.0 38.0 11.0 38.0 34-35 31.596501189703655 38.0 27.0 38.0 11.0 38.0 36-37 29.832873675102746 35.0 24.0 38.0 11.0 38.0 38-39 28.470635950681377 34.0 21.5 37.5 11.0 38.0 40-41 29.25254163962795 34.5 22.0 37.5 11.0 38.0 42-43 30.145441271901362 35.5 24.0 38.0 11.0 38.0 44-45 31.557619511139954 37.5 27.0 38.0 11.0 38.0 46-47 30.34168829764222 36.0 24.5 38.0 11.0 38.0 48-49 29.57860155743024 35.5 23.0 38.0 11.0 38.0 50-51 27.843121349772872 33.0 21.0 37.5 11.0 38.0 52-53 30.60634328358209 36.5 24.5 38.0 11.0 38.0 54-55 29.845554834523035 35.5 23.5 38.0 11.0 38.0 56-57 30.243916288124595 36.0 24.0 38.0 11.0 38.0 58-59 31.162935323383085 37.0 26.0 38.0 11.0 38.0 60-61 31.589390006489293 38.0 27.0 38.0 11.0 38.0 62-63 31.576600692191217 38.0 26.5 38.0 11.0 38.0 64-65 31.308457711442784 37.5 26.0 38.0 11.0 38.0 66-67 29.746728314947006 36.0 23.0 38.0 11.0 38.0 68-69 29.656256759679863 35.5 23.0 38.0 11.0 38.0 70-71 29.191731559593336 34.5 22.0 38.0 11.0 38.0 72-73 28.39425156824573 34.0 21.0 37.5 11.0 38.0 74-75 29.721609344581438 35.5 23.0 38.0 11.0 38.0 76 30.095446679645253 36.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 9.0 13 70.0 14 160.0 15 338.0 16 511.0 17 680.0 18 801.0 19 766.0 20 622.0 21 447.0 22 349.0 23 266.0 24 239.0 25 219.0 26 213.0 27 232.0 28 232.0 29 336.0 30 446.0 31 566.0 32 890.0 33 1255.0 34 1877.0 35 2545.0 36 2958.0 37 1464.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.55505083279256 17.63465282284231 12.978585334198572 35.83171101016656 2 18.91628812459442 14.682024659312134 41.26108587497296 25.140601341120483 3 21.08479342418343 14.676616915422885 36.680726800778714 27.557862859614968 4 16.74237508111616 18.797317759030932 27.357776335712742 37.10253082414017 5 16.033960631624485 24.859398658879517 37.10793856802942 21.99870214146658 6 27.56327060350422 32.22474583603721 14.087172831494701 26.124810728963876 7 26.817001946787798 23.783257624918882 17.396712091715337 32.003028336577984 8 21.90677049534934 31.051265412070084 17.391304347826086 29.65065974475449 9 22.2744970798183 14.887518927103613 18.689162881245945 44.14882111183214 10-11 25.17845554834523 21.944624702574085 25.30553752974259 27.57138221933809 12-13 23.44797750378542 17.247999134760978 28.788124594419205 30.515898767034393 14-15 25.20549426779148 20.530499675535367 21.712091715336364 32.5519143413368 16-17 27.46052346960848 19.156932727666018 23.420938784339175 29.96160501838633 18-19 23.44797750378542 19.070408825438026 26.62773091066407 30.853882760112484 20-21 27.255029201817 18.35388276011248 24.832359939433267 29.55872809863725 22-23 28.233830845771145 18.234912394548992 24.113130002163096 29.418126757516767 24-25 24.51600692191218 22.212308025091932 20.784663638330088 32.487021414665804 26-27 25.93553969284015 21.563378758382004 24.624161799697166 27.87691974908068 28-29 25.040558079169372 22.17174994592256 23.023469608479342 29.764222366428726 30-31 24.394332684404066 21.27406446030716 24.40785204412719 29.923750811161582 32-33 24.072571922993728 21.271360588362533 24.651200519143412 30.004866969500327 34-35 24.662016006921913 21.422777417261518 24.213173264114214 29.70203331170236 36-37 26.441163746484968 18.343067272333982 28.961172398875192 26.25459658230586 38-39 26.29245078953061 17.13443651308674 32.989941596365995 23.583171101016656 40-41 25.075708414449494 21.890547263681594 22.885572139303484 30.148172182565435 42-43 21.682349123945492 22.2961280553753 25.010815487778498 31.010707332900715 44-45 22.031148604802077 19.72744970798183 27.790395846852693 30.4510058403634 46-47 25.98961713173264 19.246160501838634 26.698031581224313 28.066190785204416 48-49 25.81116158338741 19.075816569327277 28.095933376595283 27.017088470690027 50-51 29.902119835604584 17.577871512005192 27.820138438243564 24.699870214146657 52-53 21.076681808349555 21.65801427644387 27.13876270819814 30.126541207008433 54-55 25.30283365779797 19.803158122431324 25.186567164179102 29.707441055591605 56-57 25.392061431970582 19.9978369024443 24.759355396928402 29.850746268656714 58-59 21.479558728098638 21.59041747782825 26.262708198139734 30.667315595933374 60-61 21.822950465065976 20.614319705818733 25.297425913908718 32.26530391520658 62-63 21.31462253947653 22.333982262600045 25.202790395846854 31.148604802076573 64-65 21.776984642007356 23.047804455980963 24.43759463551806 30.737616266493617 66-67 20.844148821111833 25.50562405364482 20.665693272766603 32.984533852476744 68-69 21.088067490468593 26.13362896465944 20.495903523240408 32.28240002163156 70-71 20.906337875838197 26.811594202898554 19.581440622972096 32.70062729829115 72-73 20.103287908284663 27.357776335712742 19.240752757949384 33.298182998053214 74-75 22.7125243348475 24.767467012762275 21.771576898118106 30.748431754272115 76 23.956305429374865 22.490806835388277 21.69586848366861 31.857019251568246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 0.0 14 0.0 15 0.5 16 1.0 17 1.0 18 1.0 19 6.0 20 9.5 21 8.0 22 13.5 23 19.0 24 23.0 25 27.0 26 32.5 27 41.5 28 67.5 29 90.0 30 100.5 31 121.5 32 147.5 33 163.0 34 200.5 35 281.0 36 342.0 37 360.0 38 392.5 39 476.0 40 539.0 41 587.0 42 623.0 43 669.5 44 729.5 45 751.5 46 760.0 47 738.5 48 726.5 49 728.5 50 721.0 51 689.0 52 665.0 53 647.5 54 622.0 55 588.0 56 545.5 57 552.5 58 568.0 59 548.5 60 532.5 61 508.0 62 480.0 63 476.5 64 510.0 65 531.5 66 491.5 67 467.0 68 491.5 69 497.5 70 454.0 71 429.0 72 410.5 73 366.0 74 326.0 75 312.0 76 274.0 77 211.0 78 158.0 79 130.0 80 108.0 81 71.0 82 40.0 83 24.0 84 21.0 85 15.5 86 9.0 87 5.0 88 3.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0027038719446247027 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 18492.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.99956738048886 #Duplication Level Percentage of deduplicated Percentage of total 1 99.04954389031518 98.05861994375947 2 0.8903698039001475 1.7629245078953062 3 0.060086305784672535 0.17845554834523036 4 0.0 0.0 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0054077438892494055 0.0 10 0.0 0.0 0.0 0.0054077438892494055 0.0 11 0.0 0.0 0.0 0.0054077438892494055 0.0 12 0.0 0.0 0.0 0.0054077438892494055 0.0 13 0.0 0.0 0.0 0.010815487778498811 0.0 14 0.0 0.0 0.0 0.016223231667748216 0.0 15 0.0 0.0 0.0 0.016223231667748216 0.0 16 0.0 0.0 0.0 0.016223231667748216 0.0 17 0.0 0.0 0.0 0.016223231667748216 0.0 18 0.0 0.0 0.0 0.016223231667748216 0.0 19 0.0 0.0 0.0 0.027038719446247025 0.0 20 0.0 0.0 0.0 0.043261951113995244 0.0 21 0.0 0.0 0.0 0.043261951113995244 0.0 22 0.0 0.0 0.0 0.14060134112048453 0.0 23 0.0 0.0 0.0 0.15141682889898334 0.0 24 0.0 0.0 0.0 0.18927103612372917 0.0 25 0.0 0.0 0.0 0.200086523902228 0.0 26 0.0 0.0 0.0 0.200086523902228 0.0 27 0.0 0.0 0.0 0.2163097555699762 0.0 28 0.0 0.0 0.0 0.23794073112697384 0.0 29 0.0 0.0 0.0 0.25416396279472203 0.0 30 0.0 0.0 0.0 0.28120268224096906 0.0 31 0.0 0.0 0.0 0.2920181700194679 0.0 32 0.0 0.0 0.0 0.3136491455764655 0.0 33 0.0 0.0 0.0 0.34068786502271253 0.0 34 0.0 0.0 0.0 0.4218040233614536 0.0 35 0.0 0.0 0.0 0.5083279255894441 0.0 36 0.0 0.0 0.0 0.5569976205926888 0.0 37 0.0 0.0 0.0 0.7841228639411637 0.0 38 0.0 0.0 0.0 0.9301319489508977 0.0 39 0.0 0.0 0.0 1.1734804239671208 0.0 40 0.0 0.0 0.0 1.4222366428725937 0.0 41 0.0 0.0 0.0 1.654769630110318 0.0 42 0.0 0.0 0.0 1.8764871295695436 0.0 43 0.0 0.0 0.0 2.136058836253515 0.0 44 0.0 0.0 0.0 2.4767467012762276 0.0 45 0.0 0.0 0.0 2.6389790179537096 0.0 46 0.0 0.0 0.0 2.9201817001946786 0.0 47 0.0 0.0 0.0 3.190568894657149 0.0 48 0.0 0.0 0.0 3.4068786502271253 0.0 49 0.0 0.0 0.0 3.671858100800346 0.0 50 0.0 0.0 0.0 4.00173047804456 0.0 51 0.0 0.0 0.0 4.261302184728531 0.0 52 0.0 0.0 0.0 4.520873891412503 0.0 53 0.0 0.0 0.0 4.780445598096474 0.0 54 0.0 0.0 0.0 5.126541207008436 0.0 55 0.0 0.0 0.0 5.348258706467662 0.0 56 0.0 0.0 0.0 5.580791693705386 0.0 57 0.0 0.0 0.0 5.851178888167857 0.0 58 0.0 0.0 0.0 6.035042180402336 0.0 59 0.0 0.0 0.0 6.283798399307809 0.0 60 0.0 0.0 0.0 6.402768764871296 0.0 61 0.0 0.0 0.0 6.510923642656284 0.0 62 0.0 0.0 0.0 6.613670776552023 0.0 63 0.0 0.0 0.0 6.775903093229505 0.0 64 0.0 0.0 0.0 6.954358641574735 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCTG 15 0.002190274 70.00001 42 TTCCGAC 15 0.002190274 70.00001 19 GTATCAT 15 0.002190274 70.00001 57 CTTACTC 15 0.002190274 70.00001 12 CGTATCA 15 0.002190274 70.00001 56 TTTAGAT 15 0.002190274 70.00001 37 GCCGTAT 15 0.002190274 70.00001 54 TCCGACG 15 0.002190274 70.00001 20 GCCCTAT 20 7.7240074E-5 70.0 54 GTGTTCG 20 7.7240074E-5 70.0 48 ATCTTAC 20 7.7240074E-5 70.0 10 CGCCCTA 20 7.7240074E-5 70.0 53 CATCTTA 20 7.7240074E-5 70.0 9 GATCTCG 40 9.920768E-9 61.25 41 GTAGATC 30 8.059276E-6 58.333336 38 TGTTCGC 30 8.059276E-6 58.333336 49 TGTAGAT 30 8.059276E-6 58.333336 37 ATACCCA 30 8.059276E-6 58.333336 4 GTTCGCC 30 8.059276E-6 58.333336 50 TGACTCT 25 2.3296979E-4 56.000004 13 >>END_MODULE