##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779687_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18492 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.13816785637032 34.0 34.0 34.0 31.0 34.0 2 33.344905905256326 34.0 34.0 34.0 33.0 34.0 3 33.39536015574303 34.0 34.0 34.0 34.0 34.0 4 33.47377244213714 34.0 34.0 34.0 34.0 34.0 5 33.45425048669695 34.0 34.0 34.0 34.0 34.0 6 36.70268224096907 38.0 37.0 38.0 34.0 38.0 7 36.76773739995674 38.0 37.0 38.0 34.0 38.0 8 36.53104044992429 38.0 37.0 38.0 34.0 38.0 9 36.504326195111396 38.0 37.0 38.0 34.0 38.0 10-11 36.36477936404932 38.0 37.0 38.0 34.0 38.0 12-13 36.39536015574302 38.0 37.0 38.0 34.0 38.0 14-15 36.44216417910448 38.0 37.0 38.0 34.0 38.0 16-17 36.27057646549859 38.0 36.5 38.0 33.5 38.0 18-19 36.2402930997188 38.0 37.0 38.0 34.0 38.0 20-21 36.438135409906984 38.0 37.0 38.0 34.0 38.0 22-23 36.23426346528228 38.0 37.0 38.0 34.0 38.0 24-25 36.16047479991347 38.0 36.0 38.0 33.0 38.0 26-27 35.96055050832793 38.0 36.0 38.0 32.0 38.0 28-29 35.84963768115942 38.0 36.0 38.0 31.0 38.0 30-31 35.86556348691326 38.0 36.5 38.0 31.5 38.0 32-33 35.544208306294614 38.0 36.0 38.0 31.0 38.0 34-35 35.30405040017305 38.0 36.0 38.0 29.0 38.0 36-37 35.105586199437596 38.0 35.0 38.0 29.0 38.0 38-39 34.09747458360372 37.0 34.0 38.0 23.5 38.0 40-41 35.18305213065109 37.5 35.5 38.0 29.0 38.0 42-43 35.750621890547265 38.0 36.0 38.0 31.0 38.0 44-45 35.73507462686567 38.0 36.0 38.0 31.0 38.0 46-47 35.731694786934895 38.0 36.0 38.0 31.0 38.0 48-49 35.68651308674021 38.0 36.0 38.0 31.0 38.0 50-51 35.485831711010164 38.0 36.0 38.0 31.0 38.0 52-53 35.59966471987887 38.0 36.0 38.0 31.0 38.0 54-55 35.579088254380274 38.0 36.0 38.0 31.0 38.0 56-57 35.4888330088687 38.0 36.0 38.0 31.0 38.0 58-59 35.343094311053434 38.0 36.0 38.0 30.5 38.0 60-61 35.41320571057754 38.0 36.0 38.0 31.0 38.0 62-63 35.498864373783256 38.0 36.0 38.0 31.0 38.0 64-65 35.58595608911962 38.0 36.0 38.0 31.0 38.0 66-67 35.53252757949383 38.0 36.0 38.0 31.0 38.0 68-69 34.989292667099285 38.0 35.5 38.0 27.5 38.0 70-71 33.49004975124379 37.5 32.5 38.0 21.5 38.0 72-73 31.338741077222583 37.0 26.0 38.0 11.0 38.0 74-75 31.003487994808566 37.0 25.0 38.0 11.0 38.0 76 30.25367726584469 36.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 6.0 23 14.0 24 18.0 25 35.0 26 72.0 27 111.0 28 203.0 29 329.0 30 480.0 31 702.0 32 1049.0 33 1466.0 34 2245.0 35 3054.0 36 3294.0 37 5413.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.1440622972096 17.126324897252864 12.286394116374648 37.44321868916288 2 17.00735453168938 15.53104044992429 43.19705818732425 24.26454683106208 3 18.256543370105994 19.743672939649578 38.422020333117025 23.577763357127406 4 14.292667099286177 26.492537313432834 29.969716634220205 29.245078953060784 5 14.422452952628165 32.48431754272117 37.82176076141034 15.271468743240321 6 27.763357127406447 39.1196192948302 14.995673804888602 18.121349772874755 7 24.935107073329007 27.833657797966687 16.19078520441272 31.040449924291586 8 20.711659095825222 41.23945489941596 15.698680510491023 22.35020549426779 9 20.230369889682024 16.969500324464633 14.108803807051698 48.69132597880164 10-11 23.612913692407528 25.946355180618646 26.04099069868051 24.399740428293313 12-13 23.45879299156392 15.390439108803807 27.668721609344583 33.48204629028769 14-15 23.899524118537744 16.47469175859831 17.302076573653473 42.32370754921047 16-17 31.481181051265413 25.735453168937923 15.474259139087174 27.309106640709498 18-19 31.316244862643305 20.622431321652606 16.004218040233614 32.057105775470475 20-21 23.710253082414017 18.191650443434998 15.682457278823275 42.41563919532771 22-23 24.348366861345447 26.733181916504435 15.928509625784123 32.989941596365995 24-25 31.99762059268873 27.409149902660612 15.674345662989401 24.91888384166126 26-27 31.20808998485832 29.458684836686132 17.2398875189271 22.093337659528444 28-29 23.98334414882111 27.603828682673587 19.85993943326844 28.552887735236858 30-31 23.29385680294181 18.337659528444732 33.106208089984854 25.262275578628596 32-33 32.25448842742808 16.493618862210685 20.61702357776336 30.63486913259788 34-35 32.154445165476965 18.110534285096257 18.021306510923644 31.713714038503138 36-37 32.58706467661692 24.145576465498593 18.978477179320787 24.288881678563705 38-39 23.512870430456413 19.60036772658447 26.20051914341337 30.68624269954575 40-41 22.277200951762925 17.226368159203982 28.423101881894873 32.07332900713823 42-43 30.72680077871512 16.793748648064028 28.387951546614755 24.0914990266061 44-45 22.772009517629247 24.697166342202035 28.939541423318193 23.591282716850532 46-47 30.131948950897687 17.242591390871727 21.990590525632705 30.63486913259788 48-49 29.61010166558512 15.793316028552887 20.700843608046725 33.89573869781527 50-51 22.317759030932294 16.29353233830846 29.172074410555915 32.21663422020333 52-53 20.568353882760114 16.304347826086957 37.751460090850095 25.375838200302837 54-55 20.635950681375732 16.08803807051698 32.02465931213498 31.25135193597231 56-57 28.601557430240103 16.152930997187973 24.032013843824355 31.21349772874757 58-59 22.761194029850746 19.695003244646333 33.939000648929266 23.60480207657365 60-61 28.201384382435645 29.499242915855504 20.635950681375732 21.66342202033312 62-63 20.146549859398657 41.21512005191434 16.77752541639628 21.86080467229072 64-65 18.948734587929916 43.305213065109236 16.504434349989182 21.241617996971662 66-67 19.413800562405363 42.596798615617566 16.32868267358858 21.66071814838849 68-69 18.98658879515466 42.445381786718585 16.615293099718798 21.95273631840796 70-71 19.546290287691974 39.54142331819165 17.46701276227558 23.445273631840795 72-73 20.252000865239022 33.87140385031365 19.86534717715769 26.011248107289635 74-75 20.40612156608263 31.697490806835386 20.679212632489723 27.21717499459226 76 21.149686350854424 31.500108154877786 19.5598096474151 27.790395846852693 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5 10 1.5 11 0.0 12 0.0 13 0.5 14 0.5 15 1.0 16 1.5 17 1.0 18 5.0 19 8.5 20 8.0 21 8.0 22 12.5 23 19.0 24 33.0 25 45.0 26 43.0 27 41.5 28 70.5 29 99.0 30 110.0 31 140.5 32 169.5 33 179.0 34 204.0 35 240.5 36 272.5 37 293.0 38 299.0 39 345.5 40 489.0 41 1057.0 42 1522.0 43 1637.5 44 1670.0 45 1309.0 46 1031.0 47 905.5 48 651.0 49 460.0 50 398.0 51 377.5 52 341.0 53 297.0 54 269.0 55 282.5 56 324.5 57 328.0 58 303.0 59 316.5 60 334.0 61 348.5 62 359.0 63 371.5 64 378.0 65 419.0 66 447.5 67 429.0 68 441.5 69 465.0 70 454.5 71 433.0 72 437.5 73 406.5 74 347.0 75 323.0 76 308.5 77 264.5 78 195.0 79 155.0 80 145.0 81 103.5 82 65.0 83 58.0 84 42.5 85 23.0 86 13.0 87 7.0 88 3.5 89 0.0 90 0.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 18492.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.75059485182782 #Duplication Level Percentage of deduplicated Percentage of total 1 79.44632366031689 48.26411421155094 2 15.364073348762686 18.667531905688946 3 3.4359978636282715 6.262167423750811 4 0.8278440448638062 2.011680726800779 5 0.23144027060708564 0.7030067056024227 6 0.16912942852056256 0.6164828033744322 7 0.08011393982552964 0.34068786502271253 8 0.03560619547801318 0.17304780445598097 9 0.03560619547801318 0.1946787800129786 >10 0.2670464660850988 2.844473285745187 >50 0.05340929321701976 2.298291152930997 >100 0.04450774434751647 7.240969067704954 >500 0.0 0.0 >1k 0.008901548869503294 10.382868267358859 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 1920 10.382868267358859 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 467 2.5254163962794722 RNA PCR Primer, Index 30 (95% over 22bp) TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 291 1.5736534717715769 No Hit CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 199 1.0761410339606317 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 197 1.0653255461821327 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 185 1.00043261951114 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 93 0.5029201817001947 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 76 0.4109885355829548 No Hit TATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCT 71 0.38394981613670776 RNA PCR Primer, Index 30 (95% over 21bp) TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 69 0.3731343283582089 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 58 0.3136491455764655 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 58 0.3136491455764655 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 48 0.25957170668397145 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 40 0.2163097555699762 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 40 0.2163097555699762 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT 39 0.21090201168072678 No Hit TCTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 30 0.16223231667748217 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGTCTT 24 0.12978585334198572 No Hit GTGTATAAGAGACAGGCAGCGTCAGATGTGTATAAGCTGTCTCTTATACA 21 0.11356262167423752 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG 21 0.11356262167423752 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0054077438892494055 0.0 10 0.0 0.0 0.0 0.0054077438892494055 0.0 11 0.0 0.0 0.0 0.0054077438892494055 0.0 12 0.0 0.0 0.0 0.0054077438892494055 0.0 13 0.0 0.0 0.0 0.010815487778498811 0.0 14 0.0 0.0 0.0 0.010815487778498811 0.0 15 0.0 0.0 0.0 0.010815487778498811 0.0 16 0.0 0.0 0.0 0.010815487778498811 0.0 17 0.0 0.0 0.0 0.010815487778498811 0.0 18 0.0 0.0 0.0 0.010815487778498811 0.0 19 0.0 0.0 0.0 0.016223231667748216 0.0 20 0.0 0.0 0.0 0.03244646333549643 0.0 21 0.0 0.0 0.0 0.03244646333549643 0.0 22 0.0 0.0 0.0 0.03244646333549643 0.0 23 0.0 0.0 0.0 0.04866969500324465 0.0 24 0.0 0.0 0.0 0.06489292667099286 0.0 25 0.0 0.0 0.0 0.06489292667099286 0.0 26 0.0 0.0 0.0 0.06489292667099286 0.0 27 0.0 0.0 0.0 0.08111615833874107 0.0 28 0.0 0.0 0.0 0.1081548777849881 0.0 29 0.0 0.0 0.0 0.15682457278823275 0.0 30 0.0 0.0 0.0 0.2054942677914774 0.0 31 0.0 0.0 0.0 0.24875621890547264 0.0 32 0.0 0.0 0.0 0.2974259139087173 0.0 33 0.0 0.0 0.0 0.36772658446895956 0.0 34 0.0 0.0 0.0 0.5245511572571923 0.0 35 0.0 0.0 0.0 0.6489292667099286 0.0 36 0.0 0.0 0.0 0.8382003028336578 0.0 37 0.0 0.0 0.0 1.3032662773091066 0.0 38 0.0 0.0 0.0 1.6060999351070733 0.0 39 0.0 0.0 0.0 1.8927103612372917 0.0 40 0.0 0.0 0.0 2.1955440190352586 0.0 41 0.0 0.0 0.0 2.536231884057971 0.0 42 0.0 0.0 0.0 2.8228423101881894 0.0 43 0.0 0.0 0.0 3.163530175210902 0.0 44 0.0 0.0 0.0 3.5853341985723555 0.0 45 0.0 0.0 0.0 3.942245295262816 0.0 46 0.0 0.0 0.0 4.293748648064028 0.0 47 0.0 0.0 0.0 4.693921695868483 0.0 48 0.0 0.0 0.0 5.040017304780446 0.0 49 0.0 0.0 0.0 5.553752974259139 0.0 50 0.0 0.0 0.0 5.948518278174346 0.0 51 0.0 0.0 0.0 6.283798399307809 0.0 52 0.0 0.0 0.0 6.613670776552023 0.0 53 0.0 0.0 0.0 6.894873458792992 0.0 54 0.0 0.0 0.0 7.257192299372702 0.0 55 0.0 0.0 0.0 7.597880164395415 0.0 56 0.0 0.0 0.0 7.884490590525632 0.0 57 0.0 0.0 0.0 8.27384815055159 0.0 58 0.0 0.0 0.0 8.560458576681809 0.0 59 0.0 0.0 0.0 8.90114644170452 0.0 60 0.0 0.0 0.0 9.18234912394549 0.0 61 0.0 0.0 0.0 9.44732857451871 0.0 62 0.0 0.0 0.0 9.72853125675968 0.0 63 0.0 0.0 0.0 10.0151416828899 0.0 64 0.0 0.0 0.0 10.399091499026605 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCACAC 15 0.002190274 70.00001 10 ATAAGCC 15 0.002190274 70.00001 50 TAAGCCT 15 0.002190274 70.00001 51 TCTTTAT 30 9.6952135E-8 70.00001 1 AAGCCTG 15 0.002190274 70.00001 52 ACTCGTA 25 2.3296979E-4 56.000004 38 AGCCTGC 20 0.0068446524 52.5 53 CATGAAA 20 0.0068446524 52.5 29 CTTTATA 40 7.087492E-7 52.5 2 TTTATAC 40 7.087492E-7 52.5 3 GCCGGAA 30 5.729468E-4 46.666668 32 GAAAAAA 430 0.0 40.697674 60 TGAAAAA 430 0.0 40.697674 59 CCGGAAC 35 0.0012239347 40.000004 33 AAACATT 35 0.0012239347 40.000004 34 AACTCGT 35 0.0012239347 40.000004 37 CGGAACT 35 0.0012239347 40.000004 34 TATGCCG 430 0.0 39.88372 43 TCTGCTT 425 0.0 39.52941 53 CTGCTTG 425 0.0 39.52941 54 >>END_MODULE