##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779686_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 59404 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.680492896101274 34.0 31.0 34.0 12.0 34.0 2 28.040115143761362 34.0 23.0 34.0 12.0 34.0 3 27.095515453504813 32.0 23.0 34.0 11.0 34.0 4 29.569170426233924 34.0 27.0 34.0 12.0 34.0 5 29.068109891589792 34.0 23.0 34.0 11.0 34.0 6 31.499444481853075 37.0 27.0 38.0 11.0 38.0 7 32.526984714834015 37.0 31.0 38.0 12.0 38.0 8 31.714396336947008 37.0 27.0 38.0 11.0 38.0 9 33.1789946804929 37.0 34.0 38.0 21.0 38.0 10-11 32.99357787354387 38.0 34.0 38.0 11.0 38.0 12-13 31.95196451417413 37.0 30.0 38.0 16.0 38.0 14-15 32.003013265099995 37.0 29.0 38.0 11.5 38.0 16-17 31.696779678136153 36.5 29.0 38.0 11.0 38.0 18-19 32.233898390680764 37.0 29.5 38.0 11.5 38.0 20-21 31.222148340179114 36.5 27.0 38.0 11.0 38.0 22-23 31.148929365025925 36.0 28.5 38.0 11.0 38.0 24-25 32.42949128004848 37.0 30.5 38.0 11.0 38.0 26-27 30.935181132583665 36.5 25.5 38.0 11.0 38.0 28-29 33.02985489192647 37.5 34.0 38.0 11.0 38.0 30-31 33.47867146993468 38.0 34.0 38.0 11.0 38.0 32-33 33.56998686957107 38.0 34.0 38.0 11.0 38.0 34-35 33.631582048346914 38.0 34.0 38.0 16.0 38.0 36-37 31.56521446367248 37.0 27.5 38.0 11.0 38.0 38-39 29.768677193454984 35.0 23.0 38.0 11.0 38.0 40-41 31.03366776648037 36.5 26.5 38.0 11.0 38.0 42-43 32.08502794424618 37.0 30.0 38.0 16.0 38.0 44-45 33.62767658743519 38.0 34.5 38.0 21.0 38.0 46-47 32.252373577536865 37.5 30.0 38.0 16.0 38.0 48-49 31.616179045182143 36.5 28.5 38.0 11.0 38.0 50-51 29.504856575314793 35.0 23.0 38.0 11.0 38.0 52-53 32.78801932529797 37.0 32.5 38.0 11.0 38.0 54-55 31.90217830449128 37.0 29.5 38.0 11.0 38.0 56-57 32.31704094000404 37.5 30.0 38.0 15.5 38.0 58-59 33.35846070971652 38.0 34.0 38.0 11.0 38.0 60-61 33.79171436266918 38.0 35.0 38.0 21.0 38.0 62-63 33.69084573429399 38.0 35.0 38.0 16.0 38.0 64-65 33.39780991179045 38.0 35.0 38.0 16.0 38.0 66-67 31.47450508383274 37.0 27.0 38.0 11.0 38.0 68-69 31.503046932866475 37.0 27.0 38.0 11.0 38.0 70-71 30.976979664669045 36.5 25.5 38.0 11.0 38.0 72-73 29.89868527371894 35.0 23.5 38.0 11.0 38.0 74-75 31.928944178843174 36.5 30.0 38.0 11.0 38.0 76 32.493922968150294 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 17.0 13 118.0 14 359.0 15 616.0 16 906.0 17 1254.0 18 1501.0 19 1515.0 20 1275.0 21 947.0 22 716.0 23 564.0 24 549.0 25 562.0 26 637.0 27 801.0 28 848.0 29 1110.0 30 1536.0 31 2172.0 32 3069.0 33 4475.0 34 6718.0 35 9529.0 36 11512.0 37 6094.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.75994882499495 19.880816106659484 11.339303750589186 29.01993131775638 2 20.808363073193725 18.441519089623597 38.024375462931786 22.725742374250892 3 20.19729311157498 17.576257491078042 36.061544677126115 26.16490472022086 4 14.148878863376204 18.779880142751328 32.9977779274123 34.07346306646017 5 14.123628038515927 28.824658272170222 39.254932327789376 17.796781361524477 6 27.412295468318632 33.28058716584742 17.542589724597672 21.76452764123628 7 27.553700087536193 25.892195811729852 19.667025789509125 26.887078311224833 8 23.49000067335533 31.787421722442932 18.498754292640225 26.22382331156151 9 23.458016295198977 16.61504275806343 19.963302134536395 39.9636388122012 10-11 24.18018988620295 23.498417614975423 26.7843916234597 25.537000875361926 12-13 24.08043364813225 20.170698449573255 29.073447468983048 26.675420433311448 14-15 23.386472291428188 22.602013332435526 23.807319372432833 30.204195003703454 16-17 24.67847283011245 23.308194734361322 25.815601642987 26.197730792539225 18-19 22.389064709447176 23.362904854891926 27.537707898458013 26.71032253720288 20-21 24.344320247794762 22.72995084506094 27.35169348865396 25.574035418490336 22-23 24.823244225978048 22.0018853949229 27.302875227257424 25.871995151841627 24-25 22.328462729782505 24.943606491145378 24.547168540839 28.180762238233115 26-27 23.09291540060771 24.097064987753246 27.31741395709007 25.49260565454897 28-29 22.832829715420807 24.83355357849285 26.20131810415211 26.132298601934227 30-31 22.613797050703656 24.92929769039122 26.227190088209547 26.229715170695577 32-33 22.504376809642448 24.657430476062217 26.24402397144973 26.594168742845596 34-35 22.756043364083226 24.36788768433102 26.366911319103092 26.509157632482662 36-37 24.159350879998655 22.06267307481882 29.846726203001506 23.931249842181014 38-39 23.869604740421522 21.15850784458959 32.734327654703385 22.237559760285503 40-41 23.069153592350684 23.46390815433304 25.700289542791733 27.766648710524542 42-43 21.117264830651134 24.090128610867957 26.87950306376675 27.913103494714157 44-45 21.307487711265235 23.16931519762979 28.40886135613763 27.114335734967344 46-47 23.315769981819408 22.008618948218974 28.92566157161134 25.749949498350276 48-49 23.18951585751801 22.64578142886001 29.322099521917718 24.842603191704264 50-51 25.27355060265302 21.001952730455862 30.762238233115614 22.962258433775503 52-53 20.596256144367384 24.005117500505015 28.54521581038314 26.85341054474446 54-55 22.676082418692346 23.042219379166387 27.81041680694903 26.471281395192243 56-57 22.433674500033668 23.42687361120463 27.615985455524882 26.52346643323682 58-59 20.38330752137903 24.125479765672345 28.29775772675241 27.193454986196215 60-61 20.40014140461922 23.362904854891926 28.096592822032186 28.14036091845667 62-63 20.081981011379703 24.772742576257492 27.455221870581102 27.6900545417817 64-65 20.817621708975825 25.02861760150832 26.381220119857247 27.77254056965861 66-67 19.80590532624066 25.10352838192714 23.87212982290755 31.218436468924654 68-69 19.955047477944643 25.272745639436998 23.914068287426762 30.858138595191598 70-71 20.250319843781565 25.55383475860211 23.41845666958454 30.777388728031784 72-73 20.084506093865734 25.346777994747825 22.409265369335397 32.15945054205104 74-75 21.80156218436469 25.71123156689785 24.22564137095145 28.261564877786004 76 22.41936569927951 24.663322335196284 24.50845060938657 28.40886135613763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.5 16 3.0 17 4.0 18 7.5 19 12.5 20 20.5 21 27.0 22 35.5 23 53.0 24 76.5 25 91.0 26 121.5 27 187.0 28 252.5 29 283.0 30 358.0 31 496.0 32 699.5 33 840.0 34 934.0 35 1188.5 36 1515.5 37 1682.0 38 1882.0 39 2228.0 40 2556.5 41 2919.5 42 3100.0 43 3175.5 44 3326.5 45 3416.5 46 3431.0 47 3370.5 48 3205.0 49 2943.5 50 2787.0 51 2635.0 52 2345.5 53 2080.0 54 1952.0 55 1861.5 56 1617.5 57 1384.5 58 1305.0 59 1212.5 60 1064.5 61 989.5 62 970.0 63 942.0 64 911.5 65 887.0 66 838.5 67 812.0 68 817.5 69 803.0 70 737.5 71 692.0 72 658.5 73 590.5 74 510.5 75 465.0 76 426.0 77 331.0 78 253.5 79 232.0 80 197.0 81 126.0 82 75.0 83 60.0 84 49.5 85 32.0 86 17.5 87 10.0 88 7.5 89 4.0 90 2.5 91 2.0 92 2.0 93 2.5 94 1.5 95 0.5 96 1.0 97 0.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0016833883240185846 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 8.416941620092923E-4 28-29 8.416941620092923E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 8.416941620092923E-4 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.013467106592148677 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 59404.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.55747087738199 #Duplication Level Percentage of deduplicated Percentage of total 1 97.21926811834237 93.87246650057234 2 2.250736588852665 4.346508652615985 3 0.3591415470981014 1.040333984243485 4 0.1202949842221796 0.4646151774291294 5 0.029637894663435558 0.1430880075415797 6 0.01569065011593647 0.09090296949700358 7 0.0017434055684373857 0.011783718268130091 8 0.0017434055684373857 0.013467106592148677 9 0.0 0.0 >10 0.0017434055684373857 0.016833883240185844 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0016833883240185846 0.0 3 0.0 0.0 0.0 0.0016833883240185846 0.0 4 0.0 0.0 0.0 0.0016833883240185846 0.0 5 0.0 0.0 0.0 0.0016833883240185846 0.0 6 0.0 0.0 0.0 0.0016833883240185846 0.0 7 0.0 0.0 0.0 0.0016833883240185846 0.0 8 0.0 0.0 0.0 0.0016833883240185846 0.0 9 0.0 0.0 0.0 0.0016833883240185846 0.0 10 0.0 0.0 0.0 0.005050164972055754 0.0 11 0.0 0.0 0.0 0.005050164972055754 0.0 12 0.0 0.0 0.0 0.006733553296074338 0.0 13 0.0 0.0 0.0 0.006733553296074338 0.0 14 0.0 0.0 0.0 0.008416941620092924 0.0 15 0.0 0.0 0.0 0.008416941620092924 0.0 16 0.0 0.0 0.0 0.008416941620092924 0.0 17 0.0 0.0 0.0 0.008416941620092924 0.0 18 0.0 0.0 0.0 0.008416941620092924 0.0 19 0.0 0.0 0.0 0.011783718268130093 0.0 20 0.0 0.0 0.0 0.013467106592148677 0.0 21 0.0 0.0 0.0 0.016833883240185848 0.0 22 0.0 0.0 0.0 0.026934213184297354 0.0 23 0.0 0.0 0.0 0.028617601508315937 0.0 24 0.0 0.0 0.0 0.042084708100464614 0.0 25 0.0 0.0 0.0 0.0437680964244832 0.0 26 0.0 0.0 0.0 0.05050164972055754 0.0 27 0.0 0.0 0.0 0.08585280452494781 0.0 28 0.0 0.0 0.0 0.1195205710053195 0.0 29 0.0 0.0 0.0 0.13803784256952395 0.0 30 0.0 0.0 0.0 0.15823850245774695 0.0 31 0.0 0.0 0.0 0.17002222072587705 0.0 32 0.0 0.0 0.0 0.21715709379839743 0.0 33 0.0 0.0 0.0 0.23735775368662043 0.0 34 0.0 0.0 0.0 0.26597535519493637 0.0 35 0.0 0.0 0.0 0.3619284896639957 0.0 36 0.0 0.0 0.0 0.4359975759208134 0.0 37 0.0 0.0 0.0 0.6228536798868763 0.0 38 0.0 0.0 0.0 0.8080263955289206 0.0 39 0.0 0.0 0.0 1.0319170426233923 0.0 40 0.0 0.0 0.0 1.2827419029021614 0.0 41 0.0 0.0 0.0 1.7002222072587705 0.0 42 0.0 0.0 0.0 2.171570937983974 0.0 43 0.0 0.0 0.0 2.651336610329271 0.0 44 0.0 0.0 0.0 3.107534846138307 0.0 45 0.0 0.0 0.0 3.4139115211096898 0.0 46 0.0 0.0 0.0 3.797724058985927 0.0 47 0.0 0.0 0.0 4.2320382465827215 0.0 48 0.0 0.0 0.0 4.528314591609993 0.0 49 0.0 0.0 0.0016833883240185846 4.802706888425022 0.0 50 0.0 0.0 0.0016833883240185846 5.23365429937378 0.0 51 0.0 0.0 0.0016833883240185846 5.710053195071039 0.0 52 0.0 0.0 0.0016833883240185846 6.1662514308800755 0.0 53 0.0 0.0 0.0016833883240185846 6.821089488923305 0.0 54 0.0 0.0 0.0016833883240185846 7.472560770318497 0.0 55 0.0 0.0 0.0016833883240185846 7.853006531546697 0.0 56 0.0 0.0 0.0016833883240185846 8.240185846070972 0.0 57 0.0 0.0 0.0016833883240185846 8.576863510874688 0.0 58 0.0 0.0 0.0016833883240185846 8.831055147801495 0.0 59 0.0 0.0 0.0016833883240185846 9.142481987744933 0.0 60 0.0 0.0 0.0016833883240185846 9.295670325230624 0.0 61 0.0 0.0 0.0016833883240185846 9.5380782438893 0.0 62 0.0 0.0 0.0016833883240185846 9.70473368796714 0.0 63 0.0 0.0 0.0016833883240185846 10.001010032994412 0.0 64 0.0 0.0 0.0016833883240185846 10.282135883105514 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAACA 15 0.0022145032 70.00001 56 ATAGGGT 15 0.0022145032 70.00001 6 ATCCCGG 15 0.0022145032 70.00001 42 CATCGGA 15 0.0022145032 70.00001 9 ACATCGG 15 0.0022145032 70.00001 8 GCTGTAG 15 0.0022145032 70.00001 51 TTCCGAC 20 7.866982E-5 70.0 19 GACGCTT 20 7.866982E-5 70.0 14 CGGTGGT 55 0.0 63.63636 46 TCTCGGT 40 1.0442818E-8 61.25 43 AGTGTAG 30 8.2830775E-6 58.333336 35 CTTCCGA 25 2.3725611E-4 55.999996 18 CTCGGTG 50 9.549694E-10 55.999996 44 TGTCGAT 25 2.3725611E-4 55.999996 37 AGTGTCG 25 2.3725611E-4 55.999996 35 CGACGAC 45 2.64572E-8 54.444443 22 TCGTTTT 20 0.0069197887 52.5 39 ACGCCGG 20 0.0069197887 52.5 29 TATATAG 20 0.0069197887 52.5 44 TTCCCGC 20 0.0069197887 52.5 52 >>END_MODULE