SRR1779686_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779686_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59404
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	4362	7.342939869369067	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	695	1.1699548851929162	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	657	1.1059861288802102	No Hit
CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	321	0.5403676520099656	Illumina PCR Primer Index 10 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	319	0.5370008753619285	Illumina PCR Primer Index 10 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	297	0.49996633223351966	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	252	0.4242138576526834	No Hit
TATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCT	147	0.24745808363073196	Illumina PCR Primer Index 10 (95% over 22bp)
CTTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	134	0.22557403541849033	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	126	0.2121069288263417	No Hit
CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	120	0.20200659888223016	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT	94	0.15823850245774695	No Hit
TTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	91	0.1531883374856912	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACACA	50	9.549694E-10	55.999996	3
CTATACA	80	0.0	52.5	1
TACGTAG	20	0.0069197887	52.5	4
GTGCAAA	30	5.8342423E-4	46.666668	1
TTTACAC	60	2.5446752E-7	40.833336	2
CTTTACA	60	2.5446752E-7	40.833336	1
TTGAGTA	35	0.0012461809	40.000004	45
GCCGTCT	920	0.0	39.945656	46
TGCCGTC	915	0.0	39.78142	45
ATCTCGT	890	0.0	39.7191	37
GTCTTCT	930	0.0	39.51613	49
TCTCGTA	895	0.0	39.497204	38
CTGCTTG	930	0.0	39.139786	54
CCGTCTT	930	0.0	39.139786	47
GTATGCC	930	0.0	39.139786	42
ATGCCGT	930	0.0	39.139786	44
GATTATC	880	0.0	38.977272	33
CTCGTAT	925	0.0	38.972973	39
TCGTATG	925	0.0	38.972973	40
CGTATGC	935	0.0	38.930485	41