SRR1779685_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779685_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25127
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	1360	5.412504477255542	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	364	1.4486409042066304	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	221	0.8795319775540255	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	204	0.8118756715883312	RNA PCR Primer, Index 24 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	158	0.6288056672105703	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	131	0.5213515342062323	No Hit
TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT	76	0.302463485493692	RNA PCR Primer, Index 24 (95% over 22bp)
TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	71	0.2825645719743702	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	70	0.27858478927050584	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	54	0.2149082660086759	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	50	0.19898913519321845	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	41	0.16317109085843912	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT	34	0.13531261193138855	No Hit
TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	29	0.1154136984120667	No Hit
TCTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	27	0.10745413300433795	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	25	2.7608185E-6	70.00001	1
CAACTCG	15	0.0021995674	70.0	36
GCTCTAC	15	0.0021995674	70.0	1
TTTACAC	30	8.144751E-6	58.333332	2
ACTCTCC	20	0.0068734707	52.5	34
CGCACTC	20	0.0068734707	52.5	31
GGAACAA	20	0.0068734707	52.5	17
CTTTACA	35	2.02914E-5	50.0	1
TTGATTT	30	5.7695835E-4	46.666664	22
TTACACA	40	4.4670247E-5	43.75	3
CTTTATA	45	8.947249E-5	38.888885	2
TTTATAC	45	8.947249E-5	38.888885	3
AGCATCT	325	0.0	34.46154	34
GCATCTC	325	0.0	34.46154	35
CCGTCTT	360	0.0	34.027775	47
CGTCTTC	360	0.0	34.027775	48
GTCTTCT	365	0.0	33.56164	49
GCCGTCT	365	0.0	33.56164	46
CTTGAAA	365	0.0	33.56164	57
ATAGCAT	345	0.0	33.47826	32