FastQCFastQC Report
Wed 25 May 2016
SRR1779684_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779684_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8642
Sequences flagged as poor quality0
Sequence length76
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACTCT207.490427E-570.0000113
TTCCGAC207.490427E-570.0000119
CTGACTC207.490427E-570.0000112
TGCCTAC252.6084563E-670.0000119
GCTGCCT207.490427E-570.0000117
TCCACAT207.490427E-570.000015
CTGCCTA252.6084563E-670.0000118
CTTCCGA207.490427E-570.0000118
ATCCACA150.002150368470.04
GCCTACG150.002150368470.020
GTATCCT150.002150368470.057
TCTCGTT150.002150368470.043
AGATCTC150.002150368470.040
CTCGTTT150.002150368470.044
TAGATCT150.002150368470.039
CCACATC307.697397E-658.3333326
TCCGACG307.697397E-658.33333220
TATACCC252.2596578E-456.0000043
CTTATCC252.2596578E-456.0000041
TCTGACT252.2596578E-456.00000411
Produced by FastQC (version 0.11.5)