##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779684_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8642 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.23906503124277 34.0 34.0 34.0 32.0 34.0 2 33.39817171950937 34.0 34.0 34.0 34.0 34.0 3 33.418421661652395 34.0 34.0 34.0 34.0 34.0 4 33.44758157833835 34.0 34.0 34.0 34.0 34.0 5 33.49456144411016 34.0 34.0 34.0 34.0 34.0 6 36.834066188382316 38.0 37.0 38.0 34.0 38.0 7 36.83938903031706 38.0 37.0 38.0 34.0 38.0 8 36.63469104373988 38.0 37.0 38.0 34.0 38.0 9 36.56248553575561 38.0 37.0 38.0 34.0 38.0 10-11 36.49919000231428 38.0 37.0 38.0 34.0 38.0 12-13 36.48194862300393 38.0 37.0 38.0 34.0 38.0 14-15 36.52840777597778 38.0 37.0 38.0 34.0 38.0 16-17 36.124161073825505 38.0 36.0 38.0 33.0 38.0 18-19 36.12057394121731 38.0 36.0 38.0 33.0 38.0 20-21 36.47691506595695 38.0 37.0 38.0 34.0 38.0 22-23 36.34916685952326 38.0 37.0 38.0 34.0 38.0 24-25 36.10448970145799 38.0 36.0 38.0 32.5 38.0 26-27 35.89736172182366 38.0 36.0 38.0 31.5 38.0 28-29 35.60558898403147 38.0 36.0 38.0 31.0 38.0 30-31 35.420678083776906 38.0 36.0 38.0 31.0 38.0 32-33 35.32272622078223 38.0 36.0 38.0 30.0 38.0 34-35 34.66217310807683 37.5 34.5 38.0 26.0 38.0 36-37 34.62508678546632 37.0 34.5 38.0 26.5 38.0 38-39 33.21088868317519 37.0 34.0 38.0 21.0 38.0 40-41 34.75057856977551 37.0 34.5 38.0 28.0 38.0 42-43 35.75271927794492 38.0 36.0 38.0 31.5 38.0 44-45 35.76579495487156 38.0 36.0 38.0 31.0 38.0 46-47 35.684853043277016 38.0 36.0 38.0 31.0 38.0 48-49 35.634343901874566 38.0 36.0 38.0 31.0 38.0 50-51 35.35934968757232 38.0 36.0 38.0 31.0 38.0 52-53 35.50150428141634 38.0 36.0 38.0 31.0 38.0 54-55 35.46679009488544 38.0 36.0 38.0 31.0 38.0 56-57 35.21383938903031 38.0 36.0 38.0 28.0 38.0 58-59 35.01267067808378 38.0 35.0 38.0 27.0 38.0 60-61 34.970377227493636 37.0 35.0 38.0 27.0 38.0 62-63 35.25908354547559 38.0 36.0 38.0 29.0 38.0 64-65 35.471823651932425 38.0 36.0 38.0 31.0 38.0 66-67 35.39574172645221 38.0 36.0 38.0 31.0 38.0 68-69 33.984494330016204 37.5 34.0 38.0 23.0 38.0 70-71 30.638509604258275 35.5 26.5 38.0 16.0 38.0 72-73 25.76510067114094 26.5 11.0 37.5 10.0 38.0 74-75 24.722749363573246 24.5 11.0 37.0 11.0 38.0 76 24.431613052534136 25.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 2.0 23 7.0 24 10.0 25 18.0 26 34.0 27 73.0 28 108.0 29 180.0 30 298.0 31 414.0 32 618.0 33 909.0 34 1467.0 35 1958.0 36 1326.0 37 1219.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.930803054848415 14.68410090256885 14.59152973848646 51.793566304096274 2 10.367970377227493 9.638972460078685 59.88197176579495 20.11108539689887 3 11.640823883360333 19.463087248322147 54.17727377921777 14.718815089099746 4 9.176116639666745 38.96088868317519 27.93334876186068 23.929645915297385 5 9.592686878037492 33.64961814394816 46.0310113399676 10.726683638046747 6 16.57023837074751 47.107151122425364 13.260819254802128 23.061791252024992 7 14.579958342976163 31.97176579495487 12.161536681323767 41.286739180745194 8 12.855820411941679 48.634575329784774 13.839389030317056 24.67021522795649 9 11.791252024994215 19.91437167322379 8.123119648229576 60.17125665355242 10-11 14.313816246239297 29.62277250636427 30.479055774126362 25.584355473270076 12-13 16.564452672992363 9.864614672529507 33.04211987965749 40.52881277482064 14-15 20.880583198333717 11.235825040499885 12.890534598472575 54.99305716269382 16-17 36.536681323767645 27.192779449201577 6.902337421893081 29.3682018051377 18-19 35.22332793334876 17.675306641981024 7.081694052302708 40.01967137236751 20-21 19.411015968525806 12.630178199490857 7.30155056699838 60.657255264984954 22-23 20.79958342976163 30.426984494330018 7.289979171488081 41.48345290442027 24-25 36.27632492478593 33.46447581578339 7.023837074751214 23.235362184679474 26-27 34.20504512844249 36.69289516315668 11.762323536218467 17.339736172182366 28-29 16.396667438093036 18.780374913214533 29.379773200647996 35.443184448044434 30-31 17.183522332793334 26.492710020828515 22.541078454061562 33.782689192316596 32-33 17.21245082156908 19.312659106688265 43.75723212219393 19.717657949548713 34-35 31.312196250867853 34.9456144411016 20.13422818791946 13.607961120111087 36-37 16.35038185605184 50.387641749595005 15.731312196250869 17.53066419810229 38-39 16.153668132376765 17.28187919463087 30.16084239759315 36.40361027539921 40-41 17.36866466095811 11.559824114788244 33.29090488312891 37.78060634112474 42-43 35.29275630641055 12.115251099282572 33.406618838231886 19.185373756074984 44-45 19.949085859754685 25.983568618375376 33.39504744272159 20.672298079148348 46-47 35.17125665355242 10.234899328859061 18.143948160148113 36.44989585744041 48-49 34.01411710252256 7.30733626475353 16.790094885443185 41.88845174728072 50-51 18.334876186068037 8.105762554964128 35.50104142559592 38.058319833371904 52-53 15.656098125433926 7.677620921083082 52.7482064336959 23.918074519787087 54-55 16.83638046748438 7.498264290673455 40.08331404767415 35.58204119416802 56-57 33.97361721823652 7.990048599861144 23.50728997917149 34.52904420273085 58-59 19.312659106688265 15.436241610738255 45.770654940985885 19.480444341587596 60-61 30.750983568618373 38.538532747049295 17.391807451978707 13.31867623235362 62-63 14.620458227262208 63.77574635501041 8.157833834760472 13.445961582966905 64-65 11.58875260356399 66.6396667438093 8.036334181902337 13.735246470724368 66-67 11.530895626012496 66.6859523258505 7.845406155982411 13.937745892154593 68-69 12.132608192548021 65.08909974542931 8.128905345984725 14.649386716037954 70-71 12.526035639898172 59.22240222170794 10.466327239065032 17.78523489932886 72-73 13.984031474195788 48.25271927794492 13.775746355010416 23.987502892848877 74-75 14.747743577875491 42.970377227493636 16.390881740337885 25.890997454292986 76 14.68410090256885 44.11015968525804 15.667669520944225 25.538069891228883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 0.0 16 0.0 17 0.0 18 0.5 19 1.5 20 1.5 21 1.0 22 1.5 23 1.5 24 3.0 25 5.0 26 4.0 27 3.0 28 6.5 29 10.0 30 10.5 31 13.0 32 20.5 33 26.0 34 29.5 35 39.5 36 139.5 37 233.0 38 755.5 39 1411.5 40 1325.5 41 861.5 42 617.0 43 485.0 44 258.0 45 131.5 46 100.0 47 100.5 48 76.0 49 49.0 50 47.0 51 56.5 52 58.0 53 56.0 54 62.0 55 57.0 56 70.0 57 101.0 58 114.0 59 123.0 60 139.5 61 157.0 62 167.0 63 170.5 64 170.0 65 172.5 66 181.0 67 183.0 68 189.0 69 191.5 70 181.0 71 174.0 72 162.0 73 139.0 74 130.5 75 133.0 76 123.0 77 94.0 78 63.0 79 51.0 80 46.0 81 39.0 82 23.0 83 9.0 84 6.5 85 4.5 86 4.5 87 4.0 88 2.0 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 8642.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.316593381161766 #Duplication Level Percentage of deduplicated Percentage of total 1 84.98769483182936 35.96389724600787 2 10.527754990429314 8.909974542929877 3 1.9688269073010665 2.4994214302244853 4 0.6562756357670222 1.11085396898866 5 0.3828274541974296 0.8099976857208979 6 0.3007929997265518 0.7637121036797038 7 0.2461033634126333 0.7289979171488081 8 0.05468963631391851 0.1851423281647767 9 0.08203445447087777 0.31242767877806066 >10 0.46486190866830734 4.316130525341356 >50 0.16406890894175555 5.010414255959269 >100 0.10937927262783702 11.02753992131451 >500 0.027344818156959255 6.375838926174497 >1k 0.027344818156959255 21.98565146956723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 1900 21.98565146956723 No Hit ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT 551 6.375838926174497 TruSeq Adapter, Index 12 (95% over 23bp) TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 284 3.286276324924786 No Hit CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 252 2.9159916685952325 TruSeq Adapter, Index 12 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 214 2.476278639203888 RNA PCR Primer, Index 12 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 203 2.348993288590604 No Hit CTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 84 0.9719972228650776 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 78 0.9025688498032862 No Hit TATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCT 77 0.8909974542929877 RNA PCR Primer, Index 12 (95% over 22bp) TTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 74 0.8562832677620921 TruSeq Adapter, Index 12 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 63 0.7289979171488081 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 57 0.6595695440870168 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT 45 0.5207127979634344 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATATCGTATGCCGT 43 0.4975700069428373 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT 36 0.41657023837074747 No Hit CTTATAAACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 33 0.3818560518398519 No Hit TCTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 26 0.3008562832677621 No Hit CTTATTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 25 0.2892848877574635 No Hit CTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCT 19 0.21985651469567227 TruSeq Adapter, Index 12 (95% over 22bp) CTTATATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 19 0.21985651469567227 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCG 17 0.19671372367507522 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTTAAATCTCGTATGCCGT 16 0.1851423281647767 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAGCTCGTATGCCGT 16 0.1851423281647767 No Hit ATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGTCTT 16 0.1851423281647767 No Hit GTGTATAAGAGACAGGCAGCGTCAGATGTGTATAAGCTGTCTCTTATACA 15 0.17357093265447812 No Hit CTTATACACATCTCCGAGCCCACGAGACTACCTGAAATCTCGTATGCCGT 13 0.15042814163388105 No Hit CCTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 12 0.1388567461235825 No Hit CAGCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGC 11 0.12728535061328397 No Hit CTTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 11 0.12728535061328397 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGACATCTCGTATGCCGT 9 0.10414255959268687 No Hit TCTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 9 0.10414255959268687 No Hit CTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGTC 9 0.10414255959268687 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.011571395510298541 0.0 20 0.0 0.0 0.0 0.05785697755149271 0.0 21 0.0 0.0 0.0 0.08099976857208979 0.0 22 0.0 0.0 0.0 0.10414255959268688 0.0 23 0.0 0.0 0.0 0.10414255959268688 0.0 24 0.0 0.0 0.0 0.10414255959268688 0.0 25 0.0 0.0 0.0 0.11571395510298542 0.0 26 0.0 0.0 0.0 0.1388567461235825 0.0 27 0.0 0.0 0.0 0.1388567461235825 0.0 28 0.0 0.0 0.0 0.16199953714417958 0.0 29 0.0 0.0 0.0 0.17357093265447812 0.0 30 0.0 0.0 0.0 0.17357093265447812 0.0 31 0.0 0.0 0.0 0.19671372367507522 0.0 32 0.0 0.0 0.0 0.19671372367507522 0.0 33 0.0 0.0 0.0 0.24299930571626938 0.0 34 0.0 0.0 0.0 0.31242767877806066 0.0 35 0.0 0.0 0.0 0.34714186530895624 0.0 36 0.0 0.0 0.0 0.4628558204119417 0.0 37 0.0 0.0 0.0 0.8447118722517936 0.0 38 0.0 0.0 0.0 0.9372830363341819 0.0 39 0.0 0.0 0.0 1.087711177968063 0.0 40 0.0 0.0 0.0 1.2959962971534367 0.0 41 0.0 0.0 0.0 1.4811386253182133 0.0 42 0.0 0.0 0.0 1.7009951400138856 0.0 43 0.0 0.0 0.0 1.8167090951168712 0.0 44 0.0 0.0 0.0 2.0365656098125435 0.0 45 0.0 0.0 0.0 2.22170793797732 0.0 46 0.0 0.0 0.0 2.4647072436935895 0.0 47 0.0 0.0 0.0 2.684563758389262 0.0 48 0.0 0.0 0.0 2.8118491090025457 0.0 49 0.0 0.0 0.0 2.9159916685952325 0.0 50 0.0 0.0 0.0 3.124276787780606 0.0 51 0.0 0.0 0.0 3.2978477204350845 0.0 52 0.0 0.0 0.0 3.436704466558667 0.0 53 0.0 0.0 0.0 3.6681323767646377 0.0 54 0.0 0.0 0.0 3.88798889146031 0.0 55 0.0 0.0 0.0 3.9689886600324 0.0 56 0.0 0.0 0.0 4.096274010645684 0.0 57 0.0 0.0 0.0 4.373987502892849 0.0 58 0.0 0.0 0.0 4.593844017588522 0.0 59 0.0 0.0 0.0 4.709557972691506 0.0 60 0.0 0.0 0.0 4.848414718815089 0.0 61 0.0 0.0 0.0 5.010414255959269 0.0 62 0.0 0.0 0.0 5.149271002082851 0.0 63 0.0 0.0 0.0 5.3112705392270305 0.0 64 0.0 0.0 0.0 5.461698680860912 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACA 15 0.0021503684 70.0 1 TCTTTAT 35 3.1650416E-9 70.0 1 TTTATAC 50 8.0035534E-10 56.000004 3 CTTTATA 45 2.3066605E-8 54.444443 2 AAAACCA 20 0.0067208856 52.500004 68 TTTACAC 20 0.0067208856 52.500004 2 CTTATAC 335 0.0 44.925373 1 AACAAAA 40 4.2240004E-5 43.750004 70 TTATACA 395 0.0 38.10127 2 TATACAC 415 0.0 36.265057 3 TTGAAAT 445 0.0 31.460674 32 GAAATCT 435 0.0 31.37931 34 TGAAATC 435 0.0 31.37931 33 TCTTATA 125 7.2759576E-11 30.800001 1 AATCTCG 445 0.0 30.674156 36 AAATCTC 445 0.0 30.674156 35 ATCTCGT 450 0.0 30.333334 37 AAACAAA 70 3.1091837E-5 30.0 69 ACTACTT 505 0.0 29.801981 27 ACTTGAA 495 0.0 29.69697 30 >>END_MODULE