##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779683_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 138719 Sequences flagged as poor quality 0 Sequence length 76 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.66893504134257 34.0 31.0 34.0 12.0 34.0 2 27.968692104181834 34.0 23.0 34.0 12.0 34.0 3 26.85518926751202 32.0 21.0 34.0 11.0 34.0 4 29.4548836136362 34.0 27.0 34.0 12.0 34.0 5 28.880369668178115 34.0 23.0 34.0 11.0 34.0 6 31.22625595628573 36.0 27.0 38.0 11.0 38.0 7 32.355012651475285 37.0 31.0 38.0 12.0 38.0 8 31.519532291899452 37.0 27.0 38.0 11.0 38.0 9 33.0334561235303 37.0 33.0 38.0 21.0 38.0 10-11 32.7625343319949 37.0 31.5 38.0 11.5 38.0 12-13 31.725080918980098 36.5 29.0 38.0 16.0 38.0 14-15 31.7516526214866 36.5 29.0 38.0 11.5 38.0 16-17 31.446344768921342 36.5 28.0 38.0 16.0 38.0 18-19 31.984573129852436 37.0 29.0 38.0 11.5 38.0 20-21 30.875222572250376 35.5 27.0 38.0 11.0 38.0 22-23 30.862217864892337 35.5 26.5 38.0 11.0 38.0 24-25 32.164465574290475 36.5 29.5 38.0 16.0 38.0 26-27 30.58374123227532 36.0 25.0 38.0 11.0 38.0 28-29 32.83778357687123 37.0 32.0 38.0 16.0 38.0 30-31 33.30678926462849 37.5 34.0 38.0 21.0 38.0 32-33 33.43616231374217 38.0 34.0 38.0 21.0 38.0 34-35 33.46642132656666 38.0 34.0 38.0 21.0 38.0 36-37 31.13007590885171 36.5 27.0 38.0 11.0 38.0 38-39 29.296383336096714 34.0 23.0 37.5 11.0 38.0 40-41 30.616790057598458 35.0 26.0 38.0 11.0 38.0 42-43 31.739343565048767 36.5 29.0 38.0 16.0 38.0 44-45 33.4448597524492 37.5 34.0 38.0 21.0 38.0 46-47 31.946889034667205 37.0 29.0 38.0 16.0 38.0 48-49 31.273452086592318 36.5 27.5 38.0 16.0 38.0 50-51 28.99176753004275 34.0 22.0 37.5 11.0 38.0 52-53 32.53716506030176 37.0 32.5 38.0 16.0 38.0 54-55 31.54185079188864 36.5 28.5 38.0 16.0 38.0 56-57 32.00012615431196 37.0 29.5 38.0 16.0 38.0 58-59 33.13483372861684 37.0 34.0 38.0 21.0 38.0 60-61 33.628075461905 38.0 34.0 38.0 21.0 38.0 62-63 33.48476055911591 38.0 34.0 38.0 20.0 38.0 64-65 33.16450882719742 38.0 33.0 38.0 16.0 38.0 66-67 31.01699478802471 36.5 26.0 38.0 11.0 38.0 68-69 31.09958260944788 36.5 26.0 38.0 11.0 38.0 70-71 30.580317043807987 36.0 25.5 38.0 11.0 38.0 72-73 29.290742436147895 34.0 22.5 37.5 11.0 38.0 74-75 31.53776339218132 36.5 28.0 38.0 14.5 38.0 76 31.976585759701265 37.0 30.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 5.0 12 29.0 13 199.0 14 466.0 15 868.0 16 1509.0 17 2253.0 18 2982.0 19 3155.0 20 2906.0 21 2433.0 22 1994.0 23 1911.0 24 1924.0 25 2078.0 26 2394.0 27 3003.0 28 3361.0 29 4288.0 30 5427.0 31 6886.0 32 8848.0 33 11644.0 34 15648.0 35 19781.0 36 21492.0 37 11233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.26241538650077 16.649485650848117 10.279053338043093 30.80904562460802 2 22.5585536227914 16.5918151082404 36.098876145300935 24.750755123667272 3 21.7208889914143 15.806053965210246 33.603904295734544 28.869152747640914 4 15.866722415259735 16.444873772689917 30.417105206245765 37.27129860580458 5 16.366899992070298 28.10573893987125 36.5350096237718 18.99235144428665 6 30.819858851346964 30.341914229485507 16.162890447595498 22.675336471572027 7 30.801337966233653 24.13962139015845 18.60248850185268 26.456552141755214 8 26.124411571761215 29.640202714879937 17.558770734661216 26.67661497869764 9 24.53123986245377 14.438028504076645 18.893863044904375 42.13686858856521 10-11 27.48611366429851 21.38621855524437 24.74417062260526 26.38349715785186 12-13 26.282381692156303 17.901619490111127 27.2696470859631 28.54635173176947 14-15 25.54805827692352 20.124425989604735 22.021814197250517 32.30570153622123 16-17 26.493264943463014 20.942295145785046 24.754081224385338 27.810358686366605 18-19 25.239967848093052 20.877112672248796 25.173645528830384 28.709273950827768 20-21 25.989604734819814 20.736823893250286 25.41937902347946 27.85419234845044 22-23 26.584171977277315 19.710415525245825 26.041336255370684 27.664076242106173 24-25 25.58013797876252 22.36712154962982 22.019651520722043 30.033088950885617 26-27 24.957737543839414 21.762731902837803 25.551033943330463 27.72849660999232 28-29 26.220024294153905 22.391352146283968 23.686800056229792 27.701823503332335 30-31 25.569693255956455 22.07259488880078 23.69066070720542 28.66705114803734 32-33 25.66412191728483 22.423711585458165 23.700051183344506 28.2121153139125 34-35 25.8533561135261 22.10832125838938 23.959932812849182 28.078389815235333 36-37 25.906888895296866 20.10474638830416 27.787349692897717 26.201015023501256 38-39 25.233031755758212 19.11184803373824 31.449014165735502 24.20610604476805 40-41 25.34792434875699 21.162018664100263 24.231250292865614 29.258806694277133 42-43 23.15317101303008 21.405734676590914 25.417124731919188 30.02396957845982 44-45 23.002393379278526 20.794645174312983 27.415006199717407 28.787955246691084 46-47 24.12826113598189 20.003316104010324 28.662312477922676 27.20611028208511 48-49 24.142405553773344 20.8136739320845 28.400730987301436 26.643189526840715 50-51 24.784001903162206 19.70890269001885 30.715163661136202 24.791931745682742 52-53 21.42875165356431 22.210207222696816 27.7820431026093 28.578998021129575 54-55 22.870304288587555 21.174765890265792 27.78318446909896 28.171745352047694 56-57 22.977994845639518 21.66309225584371 27.048137401553518 28.310775496963252 58-59 21.672337726001327 22.760171861933735 26.71177081230716 28.85571959975778 60-61 21.88644424579717 21.777228293780098 26.518209867643243 29.81811759277949 62-63 21.675942212866577 22.256625046858332 26.383041610196372 29.684391130078723 64-65 22.45126733758182 22.491998039159146 25.315032152022837 29.74170247123619 66-67 21.316007641567243 23.37094041740259 22.15549868435281 33.15755325667736 68-69 21.999783690244428 23.75081116158339 22.4233902949023 31.826014853269886 70-71 22.10583608779183 24.067779503945154 21.588226176787575 32.23815823147544 72-73 21.651870194751126 24.127801146951853 20.082110506756635 34.138218151540386 74-75 24.03579976354566 24.058147582110212 22.063424550880935 29.84262810346319 76 24.425268712558662 22.87390874946834 22.480301621286504 30.22052091668649 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.5 16 6.5 17 11.0 18 10.0 19 19.0 20 32.5 21 36.0 22 47.0 23 80.0 24 130.5 25 159.0 26 205.5 27 293.0 28 415.0 29 496.0 30 579.5 31 838.0 32 1102.0 33 1191.0 34 1418.5 35 1927.5 36 2497.0 37 2785.0 38 3137.5 39 3893.0 40 4606.5 41 5176.5 42 5436.0 43 5717.5 44 6066.0 45 6322.5 46 6512.0 47 6468.0 48 6278.0 49 5937.5 50 5743.0 51 5471.5 52 4951.5 53 4508.0 54 4313.0 55 4179.5 56 3879.0 57 3700.5 58 3689.0 59 3692.5 60 3818.5 61 3884.0 62 3827.0 63 3912.5 64 3973.0 65 3892.5 66 3758.5 67 3680.0 68 3556.5 69 3248.0 70 2912.5 71 2762.0 72 2549.0 73 2169.0 74 1885.5 75 1769.0 76 1563.0 77 1206.0 78 937.5 79 820.0 80 693.5 81 467.0 82 296.5 83 226.0 84 185.0 85 106.5 86 56.5 87 44.0 88 30.5 89 11.5 90 6.0 91 3.5 92 1.0 93 0.5 94 1.5 95 2.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 7.208817825964719E-4 5 0.0 6 0.0 7 7.208817825964719E-4 8 0.0014417635651929439 9 0.0014417635651929439 10-11 0.0025230862390876524 12-13 0.00180220445649118 14-15 0.0014417635651929439 16-17 0.003243968021684124 18-19 0.00180220445649118 20-21 0.0014417635651929439 22-23 0.002162645347789416 24-25 0.0014417635651929439 26-27 0.00180220445649118 28-29 0.00180220445649118 30-31 0.0028835271303858877 32-33 0.0014417635651929439 34-35 0.0014417635651929439 36-37 0.002162645347789416 38-39 0.0028835271303858877 40-41 0.0025230862390876524 42-43 0.001081322673894708 44-45 0.002162645347789416 46-47 0.0014417635651929439 48-49 0.00180220445649118 50-51 0.00180220445649118 52-53 0.0025230862390876524 54-55 0.0014417635651929439 56-57 0.001081322673894708 58-59 0.002162645347789416 60-61 0.002162645347789416 62-63 0.002162645347789416 64-65 0.002162645347789416 66-67 0.0028835271303858877 68-69 0.020905571695297685 70-71 0.003243968021684124 72-73 0.0025230862390876524 74-75 0.002162645347789416 76 0.0014417635651929439 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 138719.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 94.7583562328224 #Duplication Level Percentage of deduplicated Percentage of total 1 96.16944697257294 91.1285871494059 2 2.868171589472244 5.435664504241426 3 0.5900859814803449 1.677467329233275 4 0.21352872376498633 0.8093452348985003 5 0.06494333638366752 0.30769619019957917 6 0.042925297568987934 0.24405183830652383 7 0.022954889846730275 0.15226173405671659 8 0.013971729067302692 0.10591504641183583 9 0.005987793651560767 0.051065413549490485 >10 0.007983686191249107 0.08794555969672133 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.20881782596472E-4 0.0 2 0.0 0.0 0.0 7.20881782596472E-4 0.0 3 0.0 0.0 0.0 7.20881782596472E-4 0.0 4 0.0 0.0 0.0 0.002162645347789416 0.0 5 0.0 0.0 0.0 0.002162645347789416 0.0 6 0.0 0.0 0.0 0.002162645347789416 0.0 7 0.0 0.0 0.0 0.002883527130385888 0.0 8 0.0 0.0 0.0 0.002883527130385888 0.0 9 0.0 0.0 0.0 0.002883527130385888 0.0 10 0.0 0.0 0.0 0.005046172478175304 0.0 11 0.0 0.0 0.0 0.005046172478175304 0.0 12 0.0 0.0 0.0 0.005046172478175304 0.0 13 0.0 0.0 0.0 0.005046172478175304 0.0 14 0.0 0.0 0.0 0.00720881782596472 0.0 15 0.0 0.0 0.0 0.00720881782596472 0.0 16 0.0 0.0 0.0 0.008650581391157664 0.0 17 0.0 0.0 0.0 0.010092344956350608 0.0 18 0.0 0.0 0.0 0.012975872086736496 0.0 19 0.0 0.0 0.0 0.01441763565192944 7.20881782596472E-4 20 0.0 0.0 0.0 0.015859399217122386 7.20881782596472E-4 21 0.0 0.0 0.0 0.016580280999718856 7.20881782596472E-4 22 0.0 0.0 0.0 0.027393507738665935 7.20881782596472E-4 23 0.0 0.0 0.0 0.02811438952126241 7.20881782596472E-4 24 0.0 0.0 0.0 0.030997916651648295 7.20881782596472E-4 25 0.0 0.0 0.0 0.033881443782034185 7.20881782596472E-4 26 0.0 0.0 0.0 0.041090261607998904 7.20881782596472E-4 27 0.0 0.0 0.0 0.09731904065052371 7.20881782596472E-4 28 0.0 0.0 0.0 0.13840930225852263 7.20881782596472E-4 29 0.0 0.0 0.0 0.17877868208392506 7.20881782596472E-4 30 0.0 0.0 0.0 0.2141018894311522 7.20881782596472E-4 31 0.0 0.0 0.0 0.2393327518220287 7.20881782596472E-4 32 0.0 0.0 0.0 0.27681860451704526 7.20881782596472E-4 33 0.0 0.0 0.0 0.3243968021684124 7.20881782596472E-4 34 0.0 0.0 0.0 0.3936014532976737 7.20881782596472E-4 35 0.0 0.0 0.0 0.58030983499016 0.001441763565192944 36 0.0 0.0 0.0 0.7259279550746474 0.001441763565192944 37 0.0 0.0 0.0 1.1743164238496528 0.001441763565192944 38 0.0 0.0 0.0 1.6306345922332197 0.001441763565192944 39 0.0 0.0 0.0 2.13525184005075 0.001441763565192944 40 0.0 0.0 0.0 2.742955182779576 0.001441763565192944 41 0.0 0.0 0.0 3.421304940202856 0.001441763565192944 42 0.0 0.0 0.0 4.071540308104874 0.001441763565192944 43 0.0 0.0 0.0 4.732588902745839 0.001441763565192944 44 0.0 0.0 0.0 5.40445072412575 0.001441763565192944 45 0.0 0.0 0.0 5.871582119248265 0.001441763565192944 46 0.0 0.0 0.0 6.472797525933722 0.001441763565192944 47 0.0 0.0 0.0 7.180703436443458 0.001441763565192944 48 0.0 0.0 0.0 7.625487496305481 0.001441763565192944 49 0.0 0.0 0.0 8.099106827471363 0.001441763565192944 50 0.0 0.0 0.0 8.760155422112328 0.001441763565192944 51 0.0 0.0 0.0 9.512756003143044 0.001441763565192944 52 0.0 0.0 0.0 10.129109927263029 0.001441763565192944 53 0.0 0.0 0.0 10.936497523771077 0.001441763565192944 54 0.0 0.0 0.0 11.644403434280813 0.001441763565192944 55 0.0 0.0 0.0 12.14757891853315 0.001441763565192944 56 0.0 0.0 0.0 12.616872959003453 0.001441763565192944 57 0.0 0.0 0.0 13.051564673909125 0.001441763565192944 58 0.0 0.0 0.0 13.4653508171195 0.001441763565192944 59 0.0 0.0 0.0 13.930319566894225 0.001441763565192944 60 0.0 0.0 0.0 14.250391078367059 0.001441763565192944 61 0.0 0.0 0.0 14.56685818092691 0.001441763565192944 62 0.0 0.0 0.0 14.810516223444518 0.001441763565192944 63 0.0 0.0 0.0 15.112565690352438 0.001441763565192944 64 0.0 0.0 0.0 15.40452281230401 0.001441763565192944 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAAGG 15 0.0022207708 70.0 3 GTGTATC 25 2.3836886E-4 55.999996 36 GCCGTAT 50 9.713403E-10 55.999996 54 GTATTGT 20 0.0069392202 52.5 22 GTATCTC 40 7.4363015E-7 52.5 38 AAGGATC 20 0.0069392202 52.5 43 TGCGTCA 20 0.0069392202 52.5 69 TAGATCT 50 6.14873E-8 48.999996 39 GGTCGTA 30 5.861442E-4 46.666664 50 CATTGCG 30 5.861442E-4 46.666664 47 TGCCTAC 65 9.915311E-9 43.076923 19 TCGGTGG 145 0.0 41.03448 45 CGGTGGT 155 0.0 40.64516 46 CGTATCA 70 1.9073923E-8 40.0 56 CGACTAG 35 0.0012519555 40.0 22 GTAGATC 45 9.160115E-5 38.888885 38 ATCTCGG 105 1.2732926E-11 36.666664 42 TCCATAC 50 1.7027553E-4 35.0 3 GCTGCCT 70 8.626812E-7 35.0 17 CCGTATC 110 2.3646862E-11 35.0 55 >>END_MODULE