Basic Statistics
Measure | Value |
---|---|
Filename | SRR1779677_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 471949 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 61 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT | 16995 | 3.6010246869894837 | No Hit |
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG | 2405 | 0.5095889598240487 | No Hit |
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC | 1185 | 0.2510864521378369 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACTGA | 15 | 0.002219725 | 70.034676 | 51 |
GACTAAT | 15 | 0.002219725 | 70.034676 | 49 |
CCTTTAA | 15 | 0.0022243964 | 69.99757 | 37 |
AGGGGGG | 1790 | 0.0 | 61.96795 | 70 |
TGGGTAC | 20 | 0.0069562946 | 52.48705 | 3 |
ACCTAAT | 20 | 0.0069562946 | 52.48705 | 1 |
TGATTAA | 20 | 0.0069562946 | 52.48705 | 32 |
TTAGTTA | 40 | 7.487615E-7 | 52.48705 | 30 |
ATAGTGT | 20 | 0.0069562946 | 52.48705 | 8 |
TATAAGG | 20 | 0.0069562946 | 52.48705 | 4 |
CTAGAAA | 115 | 0.0 | 51.74281 | 57 |
TCGTATG | 3260 | 0.0 | 51.424587 | 40 |
GTATGCC | 3075 | 0.0 | 51.147278 | 42 |
CGTATGC | 3165 | 0.0 | 50.888683 | 41 |
TAATCTC | 3140 | 0.0 | 50.815487 | 35 |
CTCGTAT | 3225 | 0.0 | 50.78893 | 39 |
TTGAAAA | 3285 | 0.0 | 50.50588 | 58 |
TGAAAAA | 3410 | 0.0 | 50.502125 | 59 |
GAAAAAA | 3550 | 0.0 | 50.471767 | 60 |
CCGTCTT | 3000 | 0.0 | 50.457066 | 47 |