SRR1779669_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779669_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	275561
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18514	6.718657574910818	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	587	0.21301998468578642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTCGC	20	0.0069464575	52.5	44
CTATTCG	20	0.0069464575	52.5	43
GCCGTAT	120	0.0	46.666664	54
CGTATCA	125	0.0	44.8	56
CATTAAA	145	0.0	43.448277	61
TCATTAA	165	0.0	40.303032	60
TAGATCT	140	0.0	40.0	39
CAAGACT	35	0.0012541083	40.0	6
GTAGATC	150	0.0	39.666668	38
GTATCAT	150	0.0	39.666668	57
CCGTATC	145	0.0	38.62069	55
ATCATTA	170	0.0	37.058823	59
ATCTCTA	40	0.0024162533	35.0	40
GTTTACA	50	1.707117E-4	35.0	1
TACAAGA	60	1.2131988E-5	35.0	4
TCTCGGT	175	0.0	34.0	43
AGATCTC	195	0.0	32.307693	40
TATCATT	200	0.0	31.499998	58
CTGTCAG	45	0.0043028337	31.111113	9
ATCAGCT	45	0.0043028337	31.111113	20