SRR1779666_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779666_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	318881
Sequences flagged as poor quality	0
Sequence length	76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	14015	4.395056463069295	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	470	0.1473904058253706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGAA	15	0.0022221818	70.00988	58
CGACTAG	20	0.006947885	52.499176	41
CGTATCA	155	0.0	42.902554	56
ATCATTA	160	0.0	37.19275	59
GTATCAT	170	0.0	35.004944	57
CGCGCTA	40	0.002415148	35.00494	59
CCGTATC	180	0.0	34.99945	55
CAGTAGT	60	1.2139268E-5	34.99945	4
TACACTT	40	0.0024170072	34.99945	5
GCCGTAT	180	0.0	34.99945	54
TCATTAA	190	0.0	31.32021	60
GTGTACC	45	0.0043041697	31.110622	20
CATTAAA	195	0.0	30.517126	61
TAGATCT	200	0.0	29.749533	39
AGCCGTG	60	4.9767713E-4	29.16621	22
TAGCTTG	50	0.00720323	27.999561	45
GTACGAG	50	0.00720323	27.999561	1
AGATCTC	230	0.0	27.390873	40
ACTATTC	65	7.947388E-4	26.922655	8
CCCAACG	65	7.947388E-4	26.922655	53