SRR1779662_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779662_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331939
Sequences flagged as poor quality	0
Sequence length	76
%GC	61

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18414	5.547404794254366	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	1181	0.35578826230120597	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTGACC	15	0.0022235066	70.0	43
TAGATCT	210	0.0	41.666668	39
CCGTATC	195	0.0	39.48718	55
GTATCAT	195	0.0	39.48718	57
GCCGTAT	205	0.0	39.26829	54
CGTATCA	200	0.0	38.5	56
ATGGGAC	50	1.7078688E-4	35.0	3
GAATGGT	40	0.002416963	35.0	25
TAAGACT	40	0.002416963	35.0	9
GTTATAC	40	0.002416963	35.0	1
GTAGATC	265	0.0	34.339622	38
ATCATTA	215	0.0	34.186047	59
AGATCTC	280	0.0	32.5	40
CATTAAA	230	0.0	31.95652	61
TACCCAG	45	0.0043040905	31.111109	5
ACTCTTG	45	0.0043040905	31.111109	5
CGTCTAT	45	0.0043040905	31.111109	1
TTAAGCA	45	0.0043040905	31.111109	2
CGAATCA	45	0.0043040905	31.111109	56
CTCTGGA	45	0.0043040905	31.111109	2