SRR1779660_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779660_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	148629
Sequences flagged as poor quality	0
Sequence length	76
%GC	64

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17009	11.44393086140659	No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG	481	0.3236245954692557	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	176	0.11841565239623492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGTAC	20	0.0069401897	52.500004	13
GTTTATA	20	0.0069401897	52.500004	48
CCTACAG	20	0.0069401897	52.500004	28
GGAACTA	20	0.0069401897	52.500004	56
AACCTTA	20	0.0069401897	52.500004	60
CAATGTG	20	0.0069401897	52.500004	14
TTGATGT	40	4.5754234E-5	43.750004	11
CTTGATG	40	4.5754234E-5	43.750004	10
CTTGTGG	35	0.001252244	40.0	1
GGTACCG	35	0.001252244	40.0	5
CGCTACT	35	0.001252244	40.0	67
TGATGTA	45	9.163277E-5	38.888885	12
GCCGTAT	75	3.5068297E-8	37.333336	54
CGTATCA	80	6.188748E-8	35.000004	56
TCCACAA	40	0.002412683	35.000004	55
TTGCACT	40	0.002412683	35.000004	29
AGATCTC	90	4.454705E-9	34.999996	40
CCGTATC	85	1.0544136E-7	32.941174	55
TAGATCT	85	1.0544136E-7	32.941174	39
GGTGCCA	45	0.004296516	31.111109	10