SRR1779660_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779660_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	148629
Sequences flagged as poor quality	0
Sequence length	76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	9533	6.413956899393793	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG	1732	1.1653176701720391	No Hit
ATTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	1217	0.8188173236716926	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	885	0.5954423430151585	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	672	0.45213249096744246	No Hit
CATATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	310	0.20857302410700468	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	267	0.17964192721474276	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	189	0.12716226308459316	TruSeq Adapter, Index 12 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTACT	40	1.3278623E-10	70.09	49
GTAATCT	15	0.0022097887	70.08999	49
ATCTAGT	15	0.0022246016	69.97208	37
ACGTATT	15	0.0022246016	69.97208	35
AAACTCG	25	2.8355425E-6	69.97207	36
CGTAAGC	55	0.0	63.67525	41
AGGGGGG	935	0.0	63.23679	70
TCGTAAG	50	1.4551915E-11	62.99606	40
CTCGTAA	45	3.8198777E-10	62.21833	39
GAAAACT	35	2.966408E-7	59.976063	34
ATTATAC	275	0.0	59.79432	1
CGTCTTA	30	8.264482E-6	58.428017	48
AGTATGC	30	8.314191E-6	58.36898	41
ATATCGT	30	8.364146E-6	58.310062	37
CTGAGGA	25	2.3889505E-4	55.977657	23
AATCGTA	25	2.3889505E-4	55.977657	38
CGTATGC	1945	0.0	54.55774	41
TATGCCG	1895	0.0	54.55554	43
GTATGCC	1905	0.0	54.453117	42
CCGTCTT	1835	0.0	54.447906	47