FastQCFastQC Report
Wed 25 May 2016
SRR1779659_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779659_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1573
Sequences flagged as poor quality0
Sequence length76
%GC73

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33721.424030514939606No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.25429116338207247No Hit
CTTATACACATCTGACGCTGCCGACGATACTCCTTGTGTAGATCTCGGTG40.25429116338207247No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.25429116338207247No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.25429116338207247No Hit
GGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.19071837253655435No Hit
CTTGTACCCCTATCCCACCAGTTAGGGATTAGTTCTGTCTCTTATACACA30.19071837253655435No Hit
ATGTGGAATTCGTGCGCCTGCGCATACACGTGCCGCAGCAGCACCTTCTC20.12714558169103624No Hit
GGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.12714558169103624No Hit
GTCGTGCCCCCGCCGCGGGACGCCGGTCCGGGACCTGTCTCTTATACACA20.12714558169103624No Hit
GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.12714558169103624No Hit
GAAGAGGAGTGGTTACCCCTGCAATCTGAGCACTGTAGTGATAGGAGAGG20.12714558169103624No Hit
GCGCGAAGTCGATGAGGCGGTACGTGCCGCCGAACGGGACGGCCGGCTTG20.12714558169103624No Hit
CGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.12714558169103624No Hit
CGGCCACCTGATCCACGAGGCGGACGCCGCCGTCGTCGAGGCCGGGCTCT20.12714558169103624No Hit
GGACGAGGACGGCGTCGTCCTTCATCTTCGCGATCACCTCCGCATCCACG20.12714558169103624No Hit
CTCCGTGGCGTCCGGGCGGTAGGCGAGCACGATGCCGGCGACGCCGAGGC20.12714558169103624No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)