SRR1779643_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779643_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233590
Sequences flagged as poor quality	0
Sequence length	76
%GC	63

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	7153	3.062203005265636	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG	1541	0.6597028982405069	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	748	0.3202191874652168	No Hit
ATTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	255	0.10916563209041484	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	247	0.10574082794640183	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACTAT	15	0.0022190667	70.0287	41
CTAGAAT	15	0.0022247296	69.98373	39
ATAGGAC	20	7.924536E-5	69.98373	3
CTTTATA	30	1.022363E-7	69.98373	2
TGTGTCC	15	0.0022247296	69.98373	8
TCTGCTA	45	3.8198777E-10	62.261078	53
TTTATAC	40	1.0641088E-8	61.235764	3
AGGGGGG	615	0.0	56.897343	70
TATCTCT	25	2.3772064E-4	56.046978	45
TACTATC	25	2.3772064E-4	56.046978	42
TAGAAAA	75	0.0	55.99897	58
CGTATGA	65	3.6379788E-12	53.86824	41
CTAGAAA	80	0.0	52.499035	57
AGTACTA	20	0.006945641	52.499035	40
AAATAGG	20	0.006951526	52.487797	1
CGTTAAA	40	7.470444E-7	52.487797	28
GTTAAAA	40	7.470444E-7	52.487797	29
TCTTTAT	40	7.470444E-7	52.487797	1
CAGAGGT	20	0.006951526	52.487797	4
GCTAGAA	75	0.0	51.343388	56