SRR1779639_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779639_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425185
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	4034	0.9487634794266027	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	1083	0.25471265449157426	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	45	2.701745E-8	54.435482	39
CGTACGT	20	0.006953565	52.49136	2
CGTATGA	95	0.0	51.600796	41
TCGTATG	830	0.0	48.485992	40
CTCGTAT	820	0.0	47.79701	39
TCTCGTA	850	0.0	47.345142	38
CGTATGC	770	0.0	46.838017	41
CGTCTTA	165	0.0	46.702923	48
TGTAACG	30	5.8799726E-4	46.65898	33
ATAGAAC	40	4.5943605E-5	43.742798	3
GTATGCC	895	0.0	43.43643	42
ATCTCGT	930	0.0	43.272446	37
CCGTCTT	660	0.0	42.457203	47
GTATGAC	150	0.0	42.027683	42
TATGCCG	925	0.0	40.891804	43
GTCTTCT	525	0.0	40.683895	49
CTTGAAA	785	0.0	40.571342	57
TGCCGTA	140	0.0	40.026367	45
GTCTTAA	35	0.001252265	40.016945	49
CGGATAT	70	1.9261279E-8	39.993416	34