SRR1779632_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779632_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192188
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	8436	4.3894519949216395	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1555	0.8091035860719712	No Hit
ATTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	1130	0.5879659500072846	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1039	0.5406164796969635	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	784	0.4079338980581514	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	235	0.12227610464753261	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	210	0.10926800840843341	RNA PCR Primer, Index 47 (95% over 21bp)
CTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	207	0.1077070368597415	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATGC	20	7.890295E-5	70.03854	41
GTCATTC	15	0.0022218146	70.00208	59
AGGGGGG	1010	0.0	54.046944	70
TAAACCG	20	0.006949604	52.4879	5
GCGTTGT	20	0.006949604	52.4879	23
CAATCGT	20	0.006949604	52.4879	28
ATCGATA	20	0.006949604	52.4879	23
TAATCGA	20	0.006949604	52.4879	21
CCGTCTT	1675	0.0	50.399055	47
CGTCTTC	1750	0.0	49.840397	48
CGTATGC	1795	0.0	49.748825	41
GTATGCC	1740	0.0	49.72421	42
ATGCCGT	1735	0.0	49.665615	44
TATGCCG	1740	0.0	49.5229	43
GCCGTCT	1705	0.0	49.51227	46
TCTTCTG	1780	0.0	49.368248	50
TCGTATG	1855	0.0	49.25957	40
GTCTTCT	1785	0.0	49.229965	49
TGCCGTC	1745	0.0	49.180264	45
CTCGTAT	1835	0.0	49.03329	39