SRR1779631_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779631_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410830
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	16666	4.056665774164496	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	729	0.1774456587883066	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTTA	20	0.0069492073	52.499363	13
GCCGTAT	100	0.0	52.499363	54
CGTATCA	135	0.0	38.888416	56
CCGTATC	135	0.0	38.888416	55
CGCCGTA	155	0.0	38.386627	53
TCTCGGT	155	0.0	36.128593	43
TGGACTT	40	0.0024177742	34.999577	5
CGTTAAA	50	1.7086965E-4	34.999577	17
TATACCG	65	2.1009258E-5	32.307297	6
TGGTCGC	185	0.0	32.16177	49
TGCTAGC	45	0.004302963	31.114521	57
CCGATAC	45	0.004305527	31.110731	39
GTTAAGC	45	0.004305527	31.110731	56
GTAGATC	185	0.0	30.269901	38
ATCTCGG	175	0.0	29.999636	42
AGATCTC	175	0.0	29.999636	40
TAGATCT	180	0.0	29.16631	39
TCGGTGG	195	0.0	28.717598	45
GTATCAT	160	1.8189894E-12	28.440617	57
TGGCATA	50	0.007205489	27.99966	30