SRR1779621_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779621_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339280
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17375	5.12113888233907	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	1070	0.31537373261023344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGTTA	15	0.0022235492	70.0	8
CGTTAAC	20	0.006947835	52.5	10
TATATTC	30	5.873513E-4	46.666664	46
GCCGTAT	270	0.0	41.48148	54
ATCATTA	275	0.0	40.727272	59
TAGATCT	265	0.0	39.622643	39
ATTAAGC	45	9.188193E-5	38.888885	3
CGTATCA	280	0.0	38.75	56
CATTAAA	280	0.0	38.75	61
CCGTATC	285	0.0	38.070175	55
TATCATT	280	0.0	37.5	58
GTATCAT	300	0.0	37.333332	57
CGCCGTA	300	0.0	36.166668	53
TCATTAA	310	0.0	35.000004	60
AATGATT	40	0.0024170384	35.0	23
TGTAGAT	335	0.0	33.43284	37
TCTCGGT	300	0.0	32.666668	43
AGATCTC	325	0.0	32.30769	40
GTAGATC	330	0.0	31.81818	38
GTAGATA	45	0.004304224	31.111109	38