SRR1779616_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779616_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	362007
Sequences flagged as poor quality	0
Sequence length	76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19553	5.401276770891171	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	1142	0.31546351313648635	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	185	0.0	45.405407	54
CGTATCA	205	0.0	40.97561	56
GATTCGA	55	6.686503E-6	38.181816	43
TATCATT	225	0.0	37.333332	58
GTATCAT	225	0.0	37.333332	57
ATCATTA	235	0.0	37.234043	59
CATTAAA	245	0.0	35.714283	61
AGTTTAT	40	0.0024172515	35.000004	42
TCATTAA	250	0.0	35.000004	60
AAGTGGT	40	0.0024172515	35.000004	11
CCGTATC	235	0.0	34.25532	55
TAGATCT	255	0.0	32.941177	39
TGTAGAT	300	0.0	31.5	37
TCTGCGA	45	0.004304601	31.111113	8
AGATCTC	270	0.0	31.11111	40
TCTCGGT	295	0.0	30.847458	43
CGCCGTA	265	0.0	30.377357	53
CGGTGGT	325	0.0	30.153847	46
GTAGATC	285	0.0	29.473684	38
GCACTAC	60	4.9776305E-4	29.166666	6