SRR1779606_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779606_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	251317
Sequences flagged as poor quality	0
Sequence length	76
%GC	64

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	10634	4.2313094617554725	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	1513	0.6020285137893577	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1154	0.45918103431124835	No Hit
CTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	708	0.28171592053064454	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	483	0.19218755595522785	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	330	0.1313082680439445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACAT	15	0.0022238544	69.99223	13
CTATACA	15	0.0022238544	69.99223	1
GTTGTAC	15	0.0022238544	69.99223	1
AGGGGGG	1300	0.0	62.185413	70
ATAACTC	55	3.6379788E-11	57.266384	29
TCGTATG	2190	0.0	53.543533	40
TCTGCTT	2150	0.0	53.247845	53
GTATGCC	2120	0.0	53.19682	42
TATGCCG	2115	0.0	53.156986	43
TGCTTGA	2175	0.0	53.09756	55
CCGTCTT	2040	0.0	53.04049	47
TGAAAAA	2265	0.0	52.99633	59
CGTATGC	2180	0.0	52.83627	41
TTGAAAA	2215	0.0	52.77067	58
CTCGTAT	2205	0.0	52.70306	39
TTCTGCT	2155	0.0	52.636925	52
ATGGGGT	20	0.006926946	52.535988	42
GTGTGTG	20	0.0069324034	52.52553	47
ATAGGTC	20	0.0069487956	52.49418	3
ATTACCT	20	0.0069487956	52.49418	5