SRR1779599_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779599_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	488058
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	16343	3.348577423175114	TruSeq Adapter, Index 5 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCG	2144	0.4392920513545521	TruSeq Adapter, Index 5 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC	1287	0.26369816702113275	RNA PCR Primer, Index 5 (95% over 21bp)
CTAATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	869	0.1780526085014486	TruSeq Adapter, Index 5 (95% over 23bp)
CTTAAACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT	623	0.1276487630568498	RNA PCR Primer, Index 5 (95% over 23bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	580	0.11883833478807847	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	1645	0.0	57.230946	70
GATCGTA	25	2.390309E-4	55.996967	39
GCCGTAT	90	0.0	54.48057	46
TATGCCG	2800	0.0	54.03029	43
CGTATGC	2930	0.0	53.653896	41
ATCTCGT	2890	0.0	53.642117	37
GTATGCC	2850	0.0	53.5684	42
TCGTATG	2935	0.0	53.540543	40
CTCGTAT	2910	0.0	53.399166	39
TCTCGTA	2950	0.0	53.14422	38
GTCTTCT	2440	0.0	52.95459	49
CCGTCTT	2495	0.0	52.920864	47
CTTGAAA	2820	0.0	52.86948	57
ACGTAAT	20	0.0069314446	52.534836	47
TCGTATT	40	7.478193E-7	52.497154	40
ATGCCGT	2895	0.0	52.13631	44
CGTCTTC	2530	0.0	52.050327	48
TTGAAAA	2980	0.0	51.322723	58
TTCTGCT	2440	0.0	51.23249	52
GCTTGAA	2845	0.0	51.18522	56