SRR1779590_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779590_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	219032
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	9493	4.334069907593411	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	3608	1.6472478907191643	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3248	1.4828883450819972	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	1547	0.7062894919463822	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	689	0.3145659081778005	No Hit
ATTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGACGT	471	0.21503707220862706	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	371	0.1693816428649695	No Hit
ATTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCAGT	270	0.12326965922787537	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	254	0.11596479053289016	No Hit
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	231	0.10546404178384894	Illumina PCR Primer Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTC	15	0.002219619	70.02284	42
ATCGTAT	45	3.8198777E-10	62.228313	39
ATTATAC	1540	0.0	62.051525	1
CTTAAGC	40	1.0590156E-8	61.26999	51
GTCTTAA	40	1.0590156E-8	61.26999	49
AGGGGGG	1055	0.0	59.70785	70
GTCTTCA	145	0.0	57.949936	49
AATCTCG	100	0.0	55.99269	36
AGCTTGA	220	0.0	54.10856	55
GCACAAC	20	0.006935605	52.51713	43
GGATCCA	20	0.0069481465	52.493153	7
GATCTCA	20	0.0069481465	52.493153	11
CGCGTGT	20	0.0069481465	52.493153	20
GCGAGTT	20	0.0069481465	52.493153	33
CCGTCTT	1820	0.0	51.362904	47
GCCGTCT	1815	0.0	51.118607	46
GTATGAC	165	0.0	50.9257	42
CGTCTTC	1850	0.0	50.9085	48
CGTATGC	2160	0.0	50.572052	41
TATGCCG	2085	0.0	50.544064	43