SRR1779588_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779588_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66006
Sequences flagged as poor quality	0
Sequence length	76
%GC	77

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	19881	30.119989091900734	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	1532	2.321001121110202	No Hit
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	217	0.32875799169772446	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	155	0.23482713692694604	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	149	0.22573705420719328	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	90	0.13635124079629124	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	83	0.12574614428991304	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	83	0.12574614428991304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	15	0.0022155987	70.00001	16
GCCGTAT	225	0.0	59.11111	54
GTATCAT	235	0.0	58.085106	57
CCGTATC	230	0.0	57.826084	55
CGCCGTA	230	0.0	57.826084	53
ATCATTA	255	0.0	57.64706	59
TCATTAA	255	0.0	57.64706	60
CATTAAA	250	0.0	57.399998	61
CGTATCA	240	0.0	56.875004	56
TATCATT	240	0.0	56.875004	58
TGGTCGC	250	0.0	56.0	49
GAGGACT	25	2.374505E-4	55.999996	4
ACTAGTG	25	2.374505E-4	55.999996	32
ATTAAAA	265	0.0	55.4717	62
AGTGTAG	260	0.0	55.192307	35
TGTAGAT	260	0.0	55.192307	37
GTAGATC	255	0.0	54.901962	38
GTGTAGA	265	0.0	54.150944	36
TTAAAAA	265	0.0	54.150944	63
TAGATCT	260	0.0	53.846153	39