Basic Statistics
Measure | Value |
---|---|
Filename | SRR1700333_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6944921 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTA | 25010 | 0.36011928717403696 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTA | 11867 | 0.1708730740061694 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8632 | 0.1242922705672246 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTT | 7894 | 0.11366579979815465 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 7838 | 0.11285945513275096 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 7955 | 0.0 | 27.51973 | 2 |
GTACCTG | 8340 | 0.0 | 26.77097 | 1 |
ACCTGGG | 8630 | 0.0 | 24.81869 | 3 |
TATAACG | 545 | 0.0 | 23.118677 | 2 |
TAACGCA | 600 | 0.0 | 20.997349 | 4 |
CCTGGGG | 6280 | 0.0 | 20.347748 | 4 |
ATAACGC | 645 | 0.0 | 19.184729 | 3 |
GTACACG | 580 | 0.0 | 15.9101515 | 1 |
GTACCGG | 610 | 0.0 | 15.496654 | 1 |
TACACGG | 600 | 0.0 | 14.999619 | 2 |
CTGGGGG | 3255 | 0.0 | 14.859126 | 5 |
GTATAAC | 1515 | 0.0 | 14.856134 | 1 |
TACCGGG | 585 | 0.0 | 13.845801 | 2 |
GTACCCG | 735 | 0.0 | 13.167386 | 1 |
GTACATG | 16890 | 0.0 | 13.0858 | 1 |
TCACGCA | 585 | 0.0 | 13.075272 | 4 |
ACGTCCG | 345 | 0.0 | 13.041832 | 43 |
TACATGG | 16815 | 0.0 | 12.724921 | 2 |
AGAGTAC | 22410 | 0.0 | 12.477806 | 11 |
TATCACG | 690 | 0.0 | 12.390989 | 2 |