Basic Statistics
Measure | Value |
---|---|
Filename | SRR1700247_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13187794 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16215 | 0.12295460484141624 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14515 | 0.0 | 24.859247 | 1 |
GTATCAA | 29245 | 0.0 | 21.344543 | 1 |
GTACCTG | 8425 | 0.0 | 18.140484 | 1 |
TACCTGG | 8380 | 0.0 | 17.7443 | 2 |
ATCAACG | 35290 | 0.0 | 17.326036 | 3 |
TCAACGC | 35690 | 0.0 | 17.131853 | 4 |
CAACGCA | 36305 | 0.0 | 16.860231 | 5 |
GTACCGG | 875 | 0.0 | 16.794899 | 1 |
TATCAAC | 37190 | 0.0 | 16.646528 | 2 |
CGAACTA | 1390 | 0.0 | 16.511526 | 29 |
AACGCAG | 37475 | 0.0 | 16.381865 | 6 |
GCGAACT | 1430 | 0.0 | 16.36058 | 28 |
GTACATG | 40965 | 0.0 | 14.984042 | 1 |
CGCGGTA | 1130 | 0.0 | 14.732992 | 43 |
ACCTGGG | 9875 | 0.0 | 14.533996 | 3 |
TACATGG | 40205 | 0.0 | 14.374259 | 2 |
CCGGTCG | 1195 | 0.0 | 13.931352 | 9 |
ACGCAGA | 44355 | 0.0 | 13.780866 | 7 |
GTACCCG | 805 | 0.0 | 13.761707 | 1 |
TACCGGG | 835 | 0.0 | 13.739949 | 2 |