FastQCFastQC Report
Wed 25 May 2016
SRR1700198_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1700198_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7113225
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACCTG102650.029.043561
TACCTGG102050.028.7685872
ACCTGGG106100.027.0981463
GTACCCG8150.023.036361
TATAACG5200.022.9294452
CCTGGGG72400.021.6890724
GGTATCA70350.020.5461351
TACCCGG8750.020.311412
GTACACG6850.019.4829541
GTATCAA123350.019.2733381
ATAACGC6950.019.0981523
TAACGCA6050.017.4769884
TACACGG6700.017.4602152
GTACCGG7150.016.1345751
TCAACGC143350.015.9762264
ATCAACG143800.015.9105853
CAACGCA147000.015.6713615
CTGGGGG38400.015.3494985
AACGCAG154500.015.1727166
TATCAAC156400.014.7293732
Produced by FastQC (version 0.11.5)