Basic Statistics
Measure | Value |
---|---|
Filename | SRR1700173_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11263546 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16339 | 0.1450608893504763 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11755 | 0.10436322628770726 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11020 | 0.0 | 29.094944 | 1 |
GTATCAA | 23735 | 0.0 | 23.20779 | 1 |
ATCAACG | 30135 | 0.0 | 17.899757 | 3 |
TCAACGC | 30310 | 0.0 | 17.78898 | 4 |
CAACGCA | 30865 | 0.0 | 17.475924 | 5 |
TATCAAC | 31660 | 0.0 | 17.173258 | 2 |
AACGCAG | 31810 | 0.0 | 17.062975 | 6 |
ACGCAGA | 36945 | 0.0 | 14.654854 | 7 |
CGCAGAG | 37470 | 0.0 | 14.455526 | 8 |
GTACATG | 29185 | 0.0 | 13.365522 | 1 |
AGAGTAC | 38600 | 0.0 | 13.344714 | 11 |
GAGTACT | 24515 | 0.0 | 13.313634 | 12 |
GTACCTG | 5660 | 0.0 | 13.225777 | 1 |
CGCGTTA | 120 | 0.0016615882 | 13.121215 | 40 |
GCAGAGT | 40895 | 0.0 | 13.118351 | 9 |
CAGAGTA | 40570 | 0.0 | 13.04602 | 10 |
TACATGG | 29095 | 0.0 | 12.734265 | 2 |
TACCTGG | 5735 | 0.0 | 12.645872 | 2 |
AGTACTT | 25805 | 0.0 | 12.569517 | 13 |
GTATTAT | 3840 | 0.0 | 12.506849 | 1 |