FastQCFastQC Report
Wed 25 May 2016
SRR1700006_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1700006_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9873848
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA127300.017.5207461
GTATCAA204900.016.8128851
CGCGAAA2406.91216E-1114.70609825
GTACCTG57650.013.7899541
GTACATG257300.013.6206181
TACCTGG54600.013.6132612
GTATTAG26350.013.2414671
ACGATCG2502.0008883E-913.2347520
TCAACGC258950.013.1594424
TACATGG257800.013.1497012
GCGCGTT6950.013.07979331
ATCAACG259950.013.0154883
CGATCGT7150.012.95604836
CGCGCAA7150.012.64757118
ATCGCGA2452.1385858E-812.605226523
TATCAAC269200.012.5846472
ACATGGG262000.012.5516623
CAACGCA270500.012.4589385
AACGCAG276950.012.3519446
TCGCGAA3052.3646862E-1012.29526124
Produced by FastQC (version 0.11.5)