Basic Statistics
Measure | Value |
---|---|
Filename | SRR1699985_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4032701 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN | 9522 | 0.2361196627272887 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTN | 7735 | 0.19180693039231028 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN | 6721 | 0.16666249245852843 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN | 4590 | 0.11381949715587641 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 5655 | 0.0 | 27.855759 | 2 |
GTACCTG | 5765 | 0.0 | 27.814617 | 1 |
ACCTGGG | 6085 | 0.0 | 25.417294 | 3 |
TAACGCA | 335 | 0.0 | 24.954357 | 4 |
TATAACG | 355 | 0.0 | 23.54994 | 2 |
ATAACGC | 440 | 0.0 | 23.000628 | 3 |
CCTGGGG | 4465 | 0.0 | 21.531168 | 4 |
TCGCGCA | 240 | 0.0 | 19.24981 | 17 |
CGCGCAA | 225 | 0.0 | 18.577595 | 18 |
AATCGCG | 250 | 0.0 | 18.479818 | 15 |
GTACCGG | 425 | 0.0 | 16.584488 | 1 |
GTATAAC | 785 | 0.0 | 15.993599 | 1 |
GTACCCG | 475 | 0.0 | 15.766174 | 1 |
CTGGGGG | 2430 | 0.0 | 15.480945 | 5 |
GTATCAA | 13830 | 0.0 | 15.273461 | 1 |
TACCCGG | 485 | 0.0 | 14.515861 | 2 |
GCAATCG | 325 | 0.0 | 14.215244 | 13 |
GGTATCA | 9165 | 0.0 | 14.107389 | 1 |
GTACATG | 10110 | 0.0 | 13.616637 | 1 |
TATCACG | 460 | 0.0 | 13.39167 | 2 |