Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660772_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38016662 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1747871 | 4.597644580158037 | No Hit |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTTCAATCTCGTATG | 174062 | 0.457857136431389 | TruSeq Adapter, Index 16 (97% over 38bp) |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 48502 | 0.12758090123746266 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 219465 | 0.0 | 84.20565 | 8 |
AGTGGTA | 222185 | 0.0 | 83.563965 | 5 |
GTATCAA | 222290 | 0.0 | 83.04038 | 9 |
GTGGTAT | 224615 | 0.0 | 82.61181 | 6 |
TGGTATC | 223770 | 0.0 | 82.60667 | 7 |
AAGCAGT | 230900 | 0.0 | 80.36325 | 1 |
GCAGTGG | 231670 | 0.0 | 80.08624 | 3 |
CAGTGGT | 236090 | 0.0 | 78.515236 | 4 |
AGCAGTG | 243245 | 0.0 | 76.36801 | 2 |
CAACGCA | 215950 | 0.0 | 43.73037 | 12-13 |
ATCAACG | 217425 | 0.0 | 43.510433 | 10-11 |
ACGCAGA | 219905 | 0.0 | 43.093464 | 14-15 |
TCAACGC | 214825 | 0.0 | 42.88533 | 12-13 |
GAGTACT | 212800 | 0.0 | 42.73698 | 20-21 |
AACGCAG | 217985 | 0.0 | 42.397305 | 14-15 |
AGAGTAC | 223050 | 0.0 | 42.275284 | 18-19 |
CGCAGAG | 221780 | 0.0 | 41.689865 | 16-17 |
AGTACTT | 224655 | 0.0 | 41.46807 | 20-21 |
GTACTTT | 222485 | 0.0 | 40.816395 | 22-23 |
TATCAAC | 226480 | 0.0 | 40.757236 | 10-11 |