Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660755_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30024056 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1229235 | 4.09416702393574 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 72452 | 0.24131316568287772 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 154510 | 0.0 | 85.868126 | 8 |
AGTGGTA | 157935 | 0.0 | 84.437355 | 5 |
GTATCAA | 157715 | 0.0 | 83.97121 | 9 |
TGGTATC | 158325 | 0.0 | 83.91184 | 7 |
GTGGTAT | 159230 | 0.0 | 83.70642 | 6 |
GCAGTGG | 167525 | 0.0 | 79.631775 | 3 |
AAGCAGT | 166065 | 0.0 | 78.63463 | 1 |
CAGTGGT | 170650 | 0.0 | 77.989006 | 4 |
AGCAGTG | 176320 | 0.0 | 75.611694 | 2 |
CAACGCA | 150370 | 0.0 | 44.988045 | 12-13 |
ATCAACG | 152135 | 0.0 | 44.512444 | 10-11 |
TCAACGC | 150325 | 0.0 | 44.073067 | 12-13 |
ACGCAGA | 153885 | 0.0 | 44.070168 | 14-15 |
AACGCAG | 151990 | 0.0 | 43.63468 | 14-15 |
AGAGTAC | 156540 | 0.0 | 43.134304 | 18-19 |
GAGTACT | 152780 | 0.0 | 42.925793 | 20-21 |
CGCAGAG | 155455 | 0.0 | 42.81024 | 16-17 |
TATCAAC | 157860 | 0.0 | 41.985737 | 10-11 |
AGTACTT | 164030 | 0.0 | 40.913002 | 20-21 |
GTACTTT | 163910 | 0.0 | 40.03147 | 22-23 |