Basic Statistics
Measure | Value |
---|---|
Filename | SRR1660750_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29120312 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1592785 | 5.469670105182939 | No Hit |
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 29514 | 0.10135193606442129 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 202630 | 0.0 | 85.74426 | 8 |
GTGGTAT | 204505 | 0.0 | 84.88463 | 6 |
AGTGGTA | 205655 | 0.0 | 84.42653 | 5 |
TGGTATC | 205180 | 0.0 | 84.371864 | 7 |
GTATCAA | 206050 | 0.0 | 84.20711 | 9 |
AAGCAGT | 211745 | 0.0 | 82.52377 | 1 |
GCAGTGG | 212200 | 0.0 | 82.51033 | 3 |
AGCAGTG | 218390 | 0.0 | 80.16204 | 2 |
CAGTGGT | 217555 | 0.0 | 79.82361 | 4 |
CAACGCA | 200345 | 0.0 | 44.591988 | 12-13 |
ATCAACG | 201485 | 0.0 | 44.417786 | 10-11 |
ACGCAGA | 202445 | 0.0 | 44.10866 | 14-15 |
AGAGTAC | 202065 | 0.0 | 43.616882 | 18-19 |
TCAACGC | 199995 | 0.0 | 43.60961 | 12-13 |
AACGCAG | 201490 | 0.0 | 43.356907 | 14-15 |
GAGTACT | 197995 | 0.0 | 43.125435 | 20-21 |
CGCAGAG | 203460 | 0.0 | 42.871338 | 16-17 |
TATCAAC | 205635 | 0.0 | 42.164543 | 10-11 |
AGTACTT | 210455 | 0.0 | 41.578842 | 20-21 |
GTACTTT | 208100 | 0.0 | 41.035866 | 22-23 |